BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZC10FM1.SCF screened BAC_end
(942 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1467 922 0.0
>3x_Contig1467
Length = 7717
Score = 922 bits (465), Expect = 0.0
Identities = 605/643 (94%), Gaps = 8/643 (1%)
Strand = Plus / Plus
Query: 89 tcaagaggggaaattaaatcaaagcagcaatatattgatcaatggtgcctctacaatgac 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5754 tcaagaggggaaattaaatcaaagcagcaatatattgatcaatggtgcctctacaatgac 5813
Query: 149 cggaatatttgcactacaactcttaaagtttcattacaggatattgaacagaatcgtgtt 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5814 cggaatatttgcactacaactcttaaagtttcattacaggatattgaacagaatcgtgtt 5873
Query: 209 aatctcatctacctccggtatgaacttcattaagtcaaatttgcctgaactagtcgatga 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5874 aatctcatctacctccggtatgaacttcattaagtcaaatttgcctgaactagtcgatga 5933
Query: 269 attgctcttcatcgactatgcagcaacgaacggtaaaatctacaaaccattaagcgatct 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5934 attgctcttcatcgactatgcagcaacgaacggtaaaatctacaaaccattaagcgatct 5993
Query: 329 agtggcaagcaatgaattggttgaatataacaatgaaactggaaattttataactcaacc 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5994 agtggcaagcaatgaattggttgaatataacaatgaaactggaaattttataactcaacc 6053
Query: 389 atttggccagggtagcttcaatttagttcttgactttattggagggtatgacattatcgg 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6054 atttggccagggtagcttcaatttagttcttgactttattggagggtatgacattatcgg 6113
Query: 449 tcactcttcttccattttgttcaaagatgctacttacattacaaccgttggcgattataa 508
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||
Sbjct: 6114 tcactcttcttccattttgtccaaagatgctacttacatcacaaccgttggcgataataa 6173
Query: 509 atcgaattacaagaaagatacttttaattcat-gggtactgcaagttcttatattaaaaa 567
|||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||
Sbjct: 6174 atcgaattacaagaaagatacttttaattcatggggtactgcaagttctaatattagaaa 6233
Query: 568 gctgtttcgaccagggctattgncctttcaataataaaagttttaattttgattcaaatg 627
|||||| ||| | |||| || ||||| || || ||| ||| |||||||| ||||||
Sbjct: 6234 gctgttcggacaggtgcta-tggtctttcgattatcaaatgttttattttgatccaaatg 6292
Query: 628 cccaattttccaccaaatgaatgggcaaaaaaattgtc-tgagcctaattaaaagggaaa 686
|| |||| | | ||||||||||| |||||||| |||| |||| ||||| |||| |||
Sbjct: 6293 ccaaattagcga-caaatgaatggccaaaaaaa-tgtcatgag-ctaatagaaagtgaag 6349
Query: 687 ttgtcaagtttattcctgtagaaatggggtttatgattggaaa 729
||||||||||||||||||||| || |||| ||||||||||||
Sbjct: 6350 ttgtcaagtttattcctgtag--atagggtatatgattggaaa 6390
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9437
Number of Sequences: 1807
Number of extensions: 9437
Number of successful extensions: 74
Number of sequences better than 1.0e-20: 1
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)