BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZC10RM1.SCF screened BAC_end
(941 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1599 1092 0.0
>3x_Contig1599
Length = 10178
Score = 1092 bits (551), Expect = 0.0
Identities = 633/650 (97%), Gaps = 8/650 (1%)
Strand = Plus / Minus
Query: 41 gcttgttacccggatt-ataccggctgacgtaatgtatatcattcacgtgatcgatgatt 99
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2819 gcttgttacccggattcataccggctgacgtaatgtatatcattcacgtgatcgatgatt 2760
Query: 100 acctccctgttcttcttcttgtcaccagcacttctcacccaccttcgtcccgctgccagc 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2759 acctccctgttcttcttcttgtcaccagcacttctcacccaccttcgtcccgctgccagc 2700
Query: 160 aaattcgagcaacctcgatatgattggtccgattagatcgaaactgacttggcccctaaa 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2699 aaattcgagcaacctcgatatgattggtccgattagatcgaaactgacttggcccctaaa 2640
Query: 220 ctcggagagtggggaacccaaatcctttctcttatctatacgaccgggtaacgtaatgtc 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2639 ctcggagagtggggaacccaaatcctttctcttatctatacgaccgggtaacgtaatgtc 2580
Query: 280 actttgcctgcttacaccatcagcaacgcactgtagcccctcctccccttatcaatccca 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2579 actttgcctgcttacaccatcagcaacgcactgtagcccctcctccccttatcaatccca 2520
Query: 340 agtatgcctttttgttttttcttctgcggtgttttctgaaaaaaatacgtttgggtctga 399
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 2519 agtatgcctttttgttttttcttctgcggtgttttctgaaataaatacgtttgggtctga 2460
Query: 400 aaactacgccattttcaagctcgaaaagagctattcaaagcacgttattcagcagtcatc 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2459 aaactacgccattttcaagctcgaaaagagctattcaaagcacgttattcagcagtcatc 2400
Query: 460 tttatttgactattcgttcatcccgtgaaagctggattccatctagtgcagtcccaatcc 519
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2399 tttatttgactatcggttcatcccgtgaaagctggattccatctagtgcagtcccaatcc 2340
Query: 520 -agtctgagtcttcgctttgttatcagaatcgattcgccaattctcattgggagaagagg 578
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2339 cagtctgagtctccgctttgttatcagaatcgattcgccaattctcattgggagaagagg 2280
Query: 579 agcacagcanattttagaacccctta-gagatttctcgcttactcttcctttctttaact 637
||||||||| |||| |||| |||| | |||||||||||||||||||||||||||||| ||
Sbjct: 2279 agcacagcaaattt-agaaaccctcaagagatttctcgcttactcttcctttcttta-ct 2222
Query: 638 tcattttggactaagggttttcgaagtgaatttttttttttttggtatgg 687
||||||| ||||| | ||||||||| ||||||||||||| ||||||||||
Sbjct: 2221 tcatttttgacta-gtgttttcgaa-tgaattttttttt-tttggtatgg 2175
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,045
Number of Sequences: 1807
Number of extensions: 17045
Number of successful extensions: 270
Number of sequences better than 1.0e-20: 1
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)