BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZC12FM1.SCF screened BAC_end
(911 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1369 745 0.0
>3x_Contig1369
Length = 7461
Score = 745 bits (376), Expect = 0.0
Identities = 423/436 (97%), Gaps = 2/436 (0%)
Strand = Plus / Plus
Query: 370 agaagaggaggaggaggaagaggagggagaagaagaggaagaagaagaggaagaggaaca 429
|||||| ||||| || || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 2286 agaagaagaggaagaagaggaggagggagaagaagaggaagaagaagaggaagaggaaca 2345
Query: 430 ggaagagcaacggccggacgaagaaccgcaacaaggacaagaagcaagacaaggtactga 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2346 ggaagagcaacggccggacgaagaaccgcaacaaggacaagaagcaagacaaggtactga 2405
Query: 490 agaacttgatcaagatgacatggatatgatgcttcttttcggagcggataacgattaggt 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2406 agaacttgatcaagatgacatggatatgatgcttcttttcggagcggataacgattaggt 2465
Query: 550 ttgaactgagagaaaagaaaccactaaaagataaacataaacagataataaatcaatacc 609
||||||||||||||||||||||||||||||| ||||| ||||||| || ||||||||| |
Sbjct: 2466 ttgaactgagagaaaagaaaccactaaaagaaaaacaaaaacagaaaaaaaatcaata-c 2524
Query: 610 ccgaagagacaataagagatacgtgatgatttagcatgttatctgagtttggaatagcat 669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2525 ccgaagagacaataagagatacgtgatgatttagcatgttatctgagtttggaatagcat 2584
Query: 670 tacagctttccatgctctacaaaggtgaacgatatgactgaatgcctgaacgaatgcgtg 729
|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 2585 tacagcttcccatgctctacaagggtgaacgatatgactgaatgcctgaacgaatgcgtg 2644
Query: 730 aatgagttgtgtaatctgaatgtataactgaatttatctagaaagcattttttttttttt 789
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 2645 aatgagttgtgtaatctgaatgtataactgaatttatctag-aagcattttttttttttt 2703
Query: 790 taaatcctttaaaggg 805
||||| ||||||||||
Sbjct: 2704 taaattctttaaaggg 2719
Score = 595 bits (300), Expect = e-170
Identities = 328/336 (97%), Gaps = 1/336 (0%)
Strand = Plus / Plus
Query: 89 aaagaagttgaattgaaacgaaaacagttaggagaaccagttgttgtagacgatgcagga 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2018 aaagaagttgaattgaaacgaaaacagttaggagaaccagttgttgtagacgatgcagga 2077
Query: 149 aatgtacagacagctcaagacatctcataaaacgtacccgatactgaagccggtgcagta 208
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 2078 aatgtacagacagctcaagacatctcagaaaacgtacccgatactgaagccggtgcagta 2137
Query: 209 tcgaacaaggccgcaatcagaaatggcagcgttagtagcggtggtagtggcgtaaccgga 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2138 tcgaacaaggccgcaatcagaaatggcagcgttagtagcggtggtagtggcgtaaccgga 2197
Query: 269 tcggcatcaattccaaacaatgctacgattaccaatggagtggaaaacattggtaccgaa 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2198 tcggcatcaattccaaacaatgctacgattaccaatggagtggaaaacattggtaccgaa 2257
Query: 329 gggaatctttatgaggaggaggatgaactagaagaagaggaagaagaggaggaggaggaa 388
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 2258 -ggaatctttatgaggaggaggatgaactagaagaagaggaagaagaggaggagggagaa 2316
Query: 389 gaggagggagaagaagaggaagaagaagaggaagag 424
|| |||| ||||||||||||||| ||| ||||||||
Sbjct: 2317 gaagaggaagaagaagaggaagaggaacaggaagag 2352
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,270
Number of Sequences: 1807
Number of extensions: 16270
Number of successful extensions: 829
Number of sequences better than 1.0e-20: 1
length of query: 911
length of database: 10,358,551
effective HSP length: 16
effective length of query: 895
effective length of database: 10,329,639
effective search space: 9245026905
effective search space used: 9245026905
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)