BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZC12RM1.SCF screened BAC_end
(917 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1506 1158 0.0
>3x_Contig1506
Length = 7652
Score = 1158 bits (584), Expect = 0.0
Identities = 702/728 (96%), Gaps = 10/728 (1%)
Strand = Plus / Plus
Query: 47 gcttatttatataaactatatattatatatatactctaataacaagaacaggaataacaa 106
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 4735 gcttatttatataaactatatag-atatatatactctaataacaagaacaggaataacaa 4793
Query: 107 ttacaattacaattacaagacaaaagaaaaaagattattactaaacggctaaacgtaatt 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4794 ttacaattacaattacaagacaaaagaaaaaagattattactaaacggctaaacgtaatt 4853
Query: 167 tgcaatcaatccctttcttatttaagtgtgttgttttagtcaactttgatagatttctt- 225
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 4854 tgcaatcaatccctttcttatttaagtgtgttgttttagtcaactttgatagaaatcaaa 4913
Query: 226 tttgaacttccttttatttcgtttttttttttctttatacttgtttctttatttctcaac 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4914 tttgaacttccttttatttcgtttttttttttctttatacttgtttctttatttctcaac 4973
Query: 286 actgctgctatttttcctacagcgaacaaattttctttccgaaagagctgtcacagtata 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4974 actgctgctatttttcctacagcgaacaaattttctttccgaaagagctgtcacagtata 5033
Query: 346 catcacagtaagcatcacagtttctttataggaaaagaaaaatgaactgcaacagcacta 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5034 catcacagtaagcatcacagtttctttataggaaaagaaaaatgaactgcaacagcacta 5093
Query: 406 gacagtgtgtagcaaaaagcatgactttcaagctcttgaatgtttcctagacagagagta 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5094 gacagtgtgtagcaaaaagcatgactttcaagctcttgaatgtttcctagacagagagta 5153
Query: 466 gaaattgcgtatattcgacgagtgactgtctgaatagcacctctaggtagtttttgctgt 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5154 gaaattgcgtatattcgacgagtgactgtctgaatagcacctctaggtagtttttgctgt 5213
Query: 526 tgcagttatcggtcgataccaattgaccgagtgatttatgtgaattatgtgtgtatctgt 585
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 5214 tgcagttatcggtcgataccaattgaccgagtgatttatgtgatttatgtgtgtatctgt 5273
Query: 586 gttccctcggggaaactacggtttgccagtagggttagccttcttttttgggttcgacgt 645
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 5274 gttccctcggggaaactacggtttgccagtagggttagcc-tctttttttggttcgacgt 5332
Query: 646 -agttattttgggttactgtggatggcctgtaccctt-gcattagctgatgtgatgtttg 703
||||| || |||||||||||| ||||||||||||| |||| |||||||||||||||||
Sbjct: 5333 aagtta-ttccggttactgtggagggcctgtacccttggcataagctgatgtgatgtttg 5391
Query: 704 ggttgagcaatttggatttaaagagttattcgaagatccggccgggaagcattttaggta 763
|| ||||||||| ||||| |||||||| |||||||| ||| ||||||||| | ||||||
Sbjct: 5392 gg-tgagcaattgtgattt-aagagttaatcgaagat-cggacgggaagca-tataggta 5447
Query: 764 gggtagcc 771
||||||||
Sbjct: 5448 gggtagcc 5455
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,050
Number of Sequences: 1807
Number of extensions: 14050
Number of successful extensions: 181
Number of sequences better than 1.0e-20: 1
length of query: 917
length of database: 10,358,551
effective HSP length: 16
effective length of query: 901
effective length of database: 10,329,639
effective search space: 9307004739
effective search space used: 9307004739
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)