BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZD01FM1.SCF screened BAC_end
(938 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1400 874 0.0
>3x_Contig1400
Length = 8536
Score = 874 bits (441), Expect = 0.0
Identities = 466/473 (98%), Gaps = 1/473 (0%)
Strand = Plus / Minus
Query: 86 taacaatttcaactatgtacctgttggcctaagtatcgaatggcattgattgtctggtcg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4513 taacaatttcaactatgtacctgttggcctaagtatcgaatggcattgattgtctggtcg 4454
Query: 146 tctccataacaagaattcaaaatgaaaattgaaaaaaaattaaaatatatgaaaacacga 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4453 tctccataacaagaattcaaaatgaaaattgaaaaaaaattaaaatatatgaaaacacga 4394
Query: 206 attcataacgttacaatcaagattttgccaactgatatcagtattatatccaacaatacg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4393 attcataacgttacaatcaagattttgccaactgatatcagtattatatccaacaatacg 4334
Query: 266 ccatcaagtacccgagagatgtcaaaaagaggttttggtatgtttaatttatgtcaccat 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4333 ccatcaagtacccgagagatgtcaaaaagaggttttggtatgtttaatttatgtcaccat 4274
Query: 326 tcaagacgttagagttttgcattgttttttgaaggttctatccatctctgacgtattgtt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4273 tcaagacgttagagttttgcattgttttttgaaggttctatccatctctgacgtattgtt 4214
Query: 386 atatcagatttaagttttcccttaatacaactgacagcgacgtcagcatagagagacaga 445
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 4213 atatcagatttaagttttcccttagtacaactgacagcgacgtcagcaaagagagacaga 4154
Query: 446 tgacagaccgttccaagattgccccaaaacacacatctagactagagagacatcccatcg 505
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 4153 tgacagacggttccaagattgccacaaaacacacatctagactagagagacatcccatcg 4094
Query: 506 acaatcggtataaatactttcaagttttccgtatgaattactctgaataatat 558
||||||||||||||||| ||||||||||| |||||| ||||||||||||||||
Sbjct: 4093 acaatcggtataaatac-ttcaagttttcggtatgatttactctgaataatat 4042
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,814
Number of Sequences: 1807
Number of extensions: 13814
Number of successful extensions: 98
Number of sequences better than 1.0e-20: 1
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)