BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZD02FM1.SCF screened BAC_end
(938 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig560 605 e-173
3x_Contig1144 434 e-121
>3x_Contig560
Length = 2642
Score = 605 bits (305), Expect = e-173
Identities = 363/381 (95%), Gaps = 1/381 (0%)
Strand = Plus / Plus
Query: 356 attgtatgctagtggatttcatttgtaaattttcagtgttgattattctaatataggtcg 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 attgtatgctagtggatttcatttgtaaattttcagtgttgattattctaatataggtcg 71
Query: 416 aatgaattagatcccggattaagtcattgtcataattagaaagatatcttatagttggaa 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 aatgaattagatcccggattaagtcattgtcataattagaaagatatcttatagttggaa 131
Query: 476 gtatgcttttccaaattacaattaattgtttttctgtcattaaagatgcactgcattgtc 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 gtatgcttttccaaattacaattaattgtttttctgtcattaaagatgcactgcattgtc 191
Query: 536 tgaaacaatcatgtaagtatagcctcaatcttttgagtttaaagtttgagacatctgctt 595
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 192 tgaaacaatcatgtaagtatagcctcaatcttttgagtttaaagtttgtgacatctgctt 251
Query: 596 ttcaggtttcattatttaacactttaagccatacaagatgtgcgcttttccgaag-ttaa 654
| |||||||||||||| ||||||| ||||||||||||||||||||||| |||||| ||||
Sbjct: 252 tccaggtttcattattaaacacttcaagccatacaagatgtgcgctttcccgaagtttaa 311
Query: 655 cattcggagaatcgaggtatgggcgaacaagaagttcaattctttttttaagaaagcagg 714
||| | ||||||||||||||| ||||||||| |||||||||||| || |||| |||| |
Sbjct: 312 catcggaagaatcgaggtatggtcgaacaagaggttcaattctttcttcaagatagcatg 371
Query: 715 cgtcagggtttttcaattctg 735
||||||| | ||||||||||
Sbjct: 372 cgtcaggtatcttcaattctg 392
>3x_Contig1144
Length = 4618
Score = 434 bits (219), Expect = e-121
Identities = 222/223 (99%)
Strand = Plus / Minus
Query: 86 caaatagatattcaattaattacgaccagcctatttaacattagcactaggaatatataa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 caaatagatattcaattaattacgaccagcctatttaacattagcactaggaatatataa 164
Query: 146 gtatagatcaaattcttgataaatttggaactatcctatcataccaccatctaattgcta 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 gtatagatcaaattcttgataaatttggaactatcctatcataccaccatctaattgcta 104
Query: 206 gttcattgtgagaatgtgatatatactcccataatttagtaatgatatgttctttcatta 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103 gttcattgtgagaatgtgatatatactcccataatttagtaatgatatgttctttcatta 44
Query: 266 gaggcggaagagttcgggctaattcgttacatgcatctaacca 308
|||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 43 gaggcggaagagttcgggctaattcggtacatgcatctaacca 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,965
Number of Sequences: 1807
Number of extensions: 12965
Number of successful extensions: 119
Number of sequences better than 1.0e-20: 2
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)