BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZD02RM1.SCF screened BAC_end
(901 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig680 1505 0.0
>3x_Contig680
Length = 2471
Score = 1505 bits (759), Expect = 0.0
Identities = 829/844 (98%), Gaps = 8/844 (0%)
Strand = Plus / Plus
Query: 48 cttaatttacaa-ggaattttataggaatttcaaaggccaaattgtctatatcatcgcaa 106
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1579 cttaatttacaaaggaattttataggaatttcaaaggccaaattgtctatatcatcgcaa 1638
Query: 107 accccatactaagatcgcaggatgacttataatctgctttctgttcctttaaacttttgg 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1639 accccatactaagatcgcaggatgacttataatctgctttctgttcctttaaacttttgg 1698
Query: 167 aatattattactacattgtttaaataggaaaaacatgaataatatatacatatccgggta 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1699 aatattattactacattgtttaaataggaaaaacatgaataatatatacatatccgggta 1758
Query: 227 aacttttgtaaaccaattcgttgcacattaatatgaagacaccattatagggacaagtca 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1759 aacttttgtaaaccaattcgttgcacattaatatgaagacaccattatagggacaagtca 1818
Query: 287 tcccactcagtggactaatatcttatctcgtatgctcctgaatgtgagatatatttaatc 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1819 tcccactcagtggactaatatcttatctcgtatgctcctgaatgtgagatatatttaatc 1878
Query: 347 catttcaccggttgataattcaattgtggttcttgacatttcaagtgtctcaccacaagt 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1879 catttcaccggttgataattcaattgtggttcttgacatttcaagtgtctcaccacaagt 1938
Query: 407 ccggaattactaaacattacaatttcgaagcccattgatattggcggtcttgaccatctt 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1939 ccggaattactaaacattacaatttcgaagcccattgatattggcggtcttgaccatctt 1998
Query: 467 aacaaatcagatagatcgtgggaagtagcaaggattgccaccttaccgctcagagtattt 526
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1999 aacaaatcagatagatcgtgggaagtagcagggattgccaccttaccgctcagagtattt 2058
Query: 527 tctgtagatcctttgtatttgttgtatttccataccatgcatttttctccggcatcgtac 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2059 tctgtagatcctttgtatttgttgtatttccataccatgcatttttctccggcatcgtac 2118
Query: 587 ttacattttcctncagagacgttaaaatcgcatttaatcgtggttgggggcacaggtatt 646
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2119 ttacattttcctccagagacgttaaaatcgcatttaatcgtggttgggggcacaggtatt 2178
Query: 647 ttaactgttacatctttggcagagacattggatgggaaaagtgatcctaacgttaccttg 706
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 2179 ttaactgttacatctttggcagagacattggatgggaaaagtgatcttaacgttaccttg 2238
Query: 707 taattgagtgttagagttcttcacgatttctacctncggtatgacgttgaatgggatatt 766
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 2239 taattgagtg-tagagttcttcacgatttctacctccggtatgacgttgaatgggatatt 2297
Query: 767 aatg-tatcaatgacacggtattgcattaattggaatggcccgtcaggaggaacgaaatg 825
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 2298 aatgttatcaatgacacggtattgcatcaattggaatggcccgtcaggaggaacgaattg 2357
Query: 826 aataacgtggttggccctcgtaccttattaagttggaacacattggttgggaatttacaa 885
|||||||||||||| ||||||| ||||||||||||| |||||||| | |||||||||||
Sbjct: 2358 aataacgtggttgg-cctcgta-cttattaagttgg-acacattgat--ggaatttacaa 2412
Query: 886 tctt 889
||||
Sbjct: 2413 tctt 2416
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6347
Number of Sequences: 1807
Number of extensions: 6347
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 901
length of database: 10,358,551
effective HSP length: 16
effective length of query: 885
effective length of database: 10,329,639
effective search space: 9141730515
effective search space used: 9141730515
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)