BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZD03RM1.SCF screened BAC_end
(957 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1546 1526 0.0
>3x_Contig1546
Length = 12922
Score = 1526 bits (770), Expect = 0.0
Identities = 881/907 (97%), Gaps = 10/907 (1%)
Strand = Plus / Plus
Query: 49 aaggtaagcaagaaagttcggcatctgcctcttcttctccttctgcggaattaggtaagg 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10859 aaggtaagcaagaaagttcggcatctgcctcttcttctccttctgcggaattaggtaagg 10918
Query: 109 attcagaggagaagatcataaaaatggccacgaagaagttatctagagattattcatggt 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10919 attcagaggagaagatcataaaaatggccacgaagaagttatctagagattattcatggt 10978
Query: 169 taccaagagtaccaaccaccgaacatatattaagagaagagttcaactcggatatgttat 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10979 taccaagagtaccaaccaccgaacatatattaagagaagagttcaactcggatatgttat 11038
Query: 229 attctggttatagacccatcgttgttggggataagaacgcaaaggagaacaaattgatgc 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11039 attctggttatagacccatcgttgttggggataagaacgcaaaggagaacaaattgatgc 11098
Query: 289 agtttgccatgaaattagaaaagcttagtgaacctgtaccctgggtatcaagtgccacgg 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11099 agtttgccatgaaattagaaaagcttagtgaacctgtaccctgggtatcaagtgccacgg 11158
Query: 349 gacaagaatttttcagcgaatgggataatgtaccatcagagattatcaaagatttgaaac 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11159 gacaagaatttttcagcgaatgggataatgtaccatcagagattatcaaagatttgaaac 11218
Query: 409 cgttccatccaccaagtattgaagaaacaaacaatgcaaaaaataaagaagccaaggaaa 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11219 cgttccatccaccaagtattgaagaaacaaacaatgcaaaaaataaagaagccaaggaaa 11278
Query: 469 agttacaaaagcaaatattactgaatgaacaagacaaattaataaatcgtaagcgaggaa 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11279 agttacaaaagcaaatattactgaatgaacaagacaaattaataaatcgtaagcgaggaa 11338
Query: 529 gaaagaagcccataatcaggttattggatctgaaacgcaaattcgagaaagaatgagaat 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11339 gaaagaagcccataatcaggttattggatctgaaacgcaaattcgagaaagaatgagaat 11398
Query: 589 tgaaatctttggaatgccaagttgattcttgacattttctcgagattctttttatttggg 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11399 tgaaatctttggaatgccaagttgattcttgacattttctcgagattctttttatttggg 11458
Query: 649 ctaacgantaacaattattagaatctctctctctccctcttttcgttaaaatcattccag 708
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11459 ctaacgataaacaattattagaatctctctctctccctcttttcgttaaaatcattccag 11518
Query: 709 ggactcaccatacccctgaaggactactnntctagttaacactantatatttccaatttt 768
|||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 11519 ggactcaccatacccctgaaggactactttctaagttaacactataatatttccaatttt 11578
Query: 769 ttctccctgtattttcacga-tcatatatagnatatatatcttatgcataccgatttaac 827
| |||||||| |||||||| |||||||||| |||||||||| ||||||| |||||||||
Sbjct: 11579 tcttccctgta-tttcacgattcatatatagtatatatatctaatgcata-cgatttaac 11636
Query: 828 aaacacaaatattttcgcctttttacttctggaaactaaaatatgttatggaatctttta 887
||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct: 11637 aaacacaaataatttcgcc-ttttacttctggaaactaaaatatg-tatggaatctttta 11694
Query: 888 caaggagtcaaaaaatttatgacatcttttcancantgaaaacgatccggaccagcattt 947
| ||||||||||||| |||||||||| ||||| || || ||||||||| |||||||||||
Sbjct: 11695 c-aggagtcaaaaaa-ttatgacatc-tttcagcaatg-aaacgatcc-gaccagcattt 11749
Query: 948 ccacttt 954
|||||||
Sbjct: 11750 ccacttt 11756
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8530
Number of Sequences: 1807
Number of extensions: 8530
Number of successful extensions: 72
Number of sequences better than 1.0e-20: 1
length of query: 957
length of database: 10,358,551
effective HSP length: 16
effective length of query: 941
effective length of database: 10,329,639
effective search space: 9720190299
effective search space used: 9720190299
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)