BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZD04FM1.SCF screened BAC_end
(894 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig643 854 0.0
>3x_Contig643
Length = 2667
Score = 854 bits (431), Expect = 0.0
Identities = 509/531 (95%), Gaps = 3/531 (0%)
Strand = Plus / Minus
Query: 86 cttcgtaatgatccggtcattagcagtattaacatttctcttattccaaaaatcttttgg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2255 cttcgtaatgatccggtcattagcagtattaacatttctcttattccaaaaatcttttgg 2196
Query: 146 aatgagcttgactagacctctccaaccgttttcctcgattatgttcacaatacccatatt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2195 aatgagcttgactagacctctccaaccgttttcctcgattatgttcacaatacccatatt 2136
Query: 206 ttcagtaactatcctgttcgagaggccatggatcgtgtaaataccaatttgggaaacaat 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2135 ttcagtaactatcctgttcgagaggccatggatcgtgtaaataccaatttgggaaacaat 2076
Query: 266 gtcatcaacttcatggtcagtgtacggtttatcgcttaattcctgaaagacgcctagaag 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2075 gtcatcaacttcatggtcagtgtacggtttatcgcttaattcctgaaagacgcctagaag 2016
Query: 326 attatctgtaatattatcaactgctttattagtcaaagatagaataataatttcacgggg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2015 attatctgtaatattatcaactgctttattagtcaaagatagaataataatttcacgggg 1956
Query: 386 tttcacctgccccgtttggatcaactctcgaactttgcatagcaatgtatatgtcttacc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1955 tttcacctgccccgtttggatcaactctcgaactttgcatagcaatgtatatgtcttacc 1896
Query: 446 tgaaccgggtcctgcaataactttcaga-tgctagcaggtatttaa-ggaattggataat 503
|||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||
Sbjct: 1895 tgaaccgggtcctgcaataactttcagagtgctagcaggtatataagggaattggataat 1836
Query: 504 ttcattctgcg-attaattggcccttttattatacaattggacccagactaccttttttg 562
||||||||||| || | |||||| ||| || |||| |||| | |||||||| | | ||
Sbjct: 1835 ttcattctgcgaatcagttggccttttcatcatacgattgaccacagactacactctatg 1776
Query: 563 ttgagtggatcagcccaatggatttccttggtacttgacgttcatttagct 613
|||||||||||||||||||||||||||| | ||| ||||||||| |||||
Sbjct: 1775 ttgagtggatcagcccaatggatttcctcgtcactcgacgttcatatagct 1725
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,230
Number of Sequences: 1807
Number of extensions: 18230
Number of successful extensions: 118
Number of sequences better than 1.0e-20: 1
length of query: 894
length of database: 10,358,551
effective HSP length: 16
effective length of query: 878
effective length of database: 10,329,639
effective search space: 9069423042
effective search space used: 9069423042
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)