BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZD04RM1.SCF screened BAC_end
(860 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1786 1098 0.0
>3x_Contig1786
Length = 33838
Score = 1098 bits (554), Expect = 0.0
Identities = 636/659 (96%), Gaps = 4/659 (0%)
Strand = Plus / Plus
Query: 35 agcttgataataactttgctgtagtcgacatccgatgcattttggttaaattcgtcatca 94
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1614 agcttgataataactttgctgtagtcgacatccgatgcattttggttaaattcgtcatca 1673
Query: 95 taaccagtgagaaaaatgtttccgggtttcaaatctctatgtattacgacgtatcctttc 154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1674 taaccagtgagaaaaatgtttccgggtttcaaatctctatgtattacgacgtatcctttc 1733
Query: 155 gattttaacggttcttccatggcatcatatatcgtttgtagcttagataaatctcttcca 214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1734 gattttaacggttcttccatggcatcatatatcgtttgtagcttagataaatctcttcca 1793
Query: 215 taatgacacttgaataaagccattaaaatttgaaccataatacgccagacgtattcttcg 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1794 taatgacacttgaataaagccattaaaatttgaaccataatacgccagacgtattcttcg 1853
Query: 275 gggacatacttccgttggtgtttgtaatatctgatcatctgggacaggtcacctttggaa 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1854 gggacatacttccgttggtgtttgtaatatctgatcatctgggacaggtcacctttggaa 1913
Query: 335 caatactccatatacaaaaataatgtattcgacttcgcatcatgatcccaatggaaaaac 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1914 caatactccatatacaaaaataatgtattcgacttcgcatcatgatcccaatggaaaaac 1973
Query: 395 tccacgatattgtcatgtttcaattgagaaaggattgcacattctgatattagttggtga 454
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1974 tccacgatattgtcatgtttcaattgagaaaggattgcacattctgatattagttgttga 2033
Query: 455 cgttctttcgcattcatatgaccatatcttacttcttttcgcaccattaccttnatgtcc 514
|||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 2034 cgttctttcgcattcatatgaccatatcttacttctttccgcaccattaccttattgtcc 2093
Query: 515 gctnctcttactacttttctaacagattcgaaagaccctctttcgattttctncagcaaa 574
||| ||||||||||||||||||||||| |||||||||||||| |||||| || |||||||
Sbjct: 2094 gcttctcttactacttttctaacagatccgaaagaccctcttccgatttcctccagcaaa 2153
Query: 575 cgatatgtaagctggctctcatttcgatccattatttgggttagctcaagggctttatta 634
||||||||| |||| ||||||||||||| ||||| |||||||||||||| ||| ||||||
Sbjct: 2154 cgatatgtaggctgtctctcatttcgattcatta-ttgggttagctcaatggc-ttatta 2211
Query: 635 att-atttcccatgttggggaatccccagaatggaatctgattattatgggaaacttta 692
||| |||||| ||||| |||||| ||||||||| |||||||||||||| || ||||||
Sbjct: 2212 attaatttccaatgtt-gggaatacccagaatgatatctgattattatgtgatacttta 2269
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6221
Number of Sequences: 1807
Number of extensions: 6221
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 860
length of database: 10,358,551
effective HSP length: 16
effective length of query: 844
effective length of database: 10,329,639
effective search space: 8718215316
effective search space used: 8718215316
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)