BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZD05RM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1056 1417 0.0
>3x_Contig1056
Length = 3113
Score = 1417 bits (715), Expect = 0.0
Identities = 841/872 (96%), Gaps = 10/872 (1%)
Strand = Plus / Minus
Query: 47 taattggaaatcc-ccatatgaatcgaagaaatccacttcgaaactcgaaggccattcac 105
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2910 taattggaaatccaccatatgaatcgaagaaatccacttcgaaactcgaaggccattcac 2851
Query: 106 aactgctatctttacgaaagcttcaggatgaaatagaagaggcaatattaactttgtcaa 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2850 aactgctatctttacgaaagcttcaggatgaaatagaagaggcaatattaactttgtcaa 2791
Query: 166 caaaccactctctcgataaaatggctcaagatacaatcgtgagcgcactttctaacatat 225
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 2790 caaaccactctctcgataaaatggctcaagatacaatcgtgagcgcactttcgaacatat 2731
Query: 226 taagcctcctaaaaatttcagaggagttcaactcaaccactgtaccatcaatgtggcgtt 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2730 taagcctcctaaaaatttcagaggagttcaactcaaccactgtaccatcaatgtggcgtt 2671
Query: 286 ccaccgtgcagatgagcattgatgtgctggatcgctttttatatattggcactataccag 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2670 ccaccgtgcagatgagcattgatgtgctggatcgctttttatatattggcactataccag 2611
Query: 346 gagttttggatcgcctattccaactggggttttctattcccgagcaatatgccaatgatg 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2610 gagttttggatcgcctattccaactggggttttctattcccgagcaatatgccaatgatg 2551
Query: 406 atgaccttgcagttattggaggtaaaacaataaaaaatgaggagtttgttacttacgact 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2550 atgaccttgcagttattggaggtaaaacaataaaaaatgaggagtttgttacttacgact 2491
Query: 466 ctgatgaggatgatgacatagatgaggttatagagaattataaaacgagaatagaccatt 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2490 ctgatgaggatgatgacatagatgaggttatagagaattataaaacgagaatagaccatt 2431
Query: 526 cactacgtatgacgaatatctataacactgctgatgcgtcgtcattaagagatttattag 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2430 cactacgtatgacgaatatctataacactgctgatgcgtcgtcattaagagatttattag 2371
Query: 586 aaggcttgaaagagatcgaaacagaagttgaaggggaagatttgacgccaaatgaactaa 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2370 aaggcttgaaagagatcgaaacagaagttgaaggggaagatttgacgccaaatgaactaa 2311
Query: 646 ccgtatacctattaaagcaccatagacaatgtttacgatggctagtgtcaatgg-aaaat 704
||||| |||||||||||||||| |||||| |||||||||||||||||||||||| |||||
Sbjct: 2310 ccgtaaacctattaaagcaccaaagacaaggtttacgatggctagtgtcaatggaaaaat 2251
Query: 705 ccagcatagggggt-gtttatgggctgatgatatgggtcttggtaaaactgttcaaagtc 763
|||||| | ||||| |||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 2250 ccagcaaaaggggtggtttattggctgatgatatgggtcttggtaaaactgttcagagtc 2191
Query: 764 tcgcctttattatgggcaatc-agccagaaccgaagtcagcgattaaaacgacattggnt 822
||||| |||||| ||||| | |||||||||||||||||||||||||||||||||||| |
Sbjct: 2190 tcgcc-ttattaatggcaaacaagccagaaccgaagtcagcgattaaaacgacattggtt 2132
Query: 823 gntgncccctgtggctgttttgaaagtgtgg-aagacaaattcgctgtcaaa--taagaa 879
| || |||||||||||||||||| ||||||| ||||| || ||||||||||| |||||
Sbjct: 2131 gttg-cccctgtggctgttttgagagtgtggaaagacgaagtcgctgtcaaaataaagaa 2073
Query: 880 agatgttatggttaa-gtggggatattcggag 910
||||||| ||||| |||| |||||||||||
Sbjct: 2072 ggatgttaatgttaaggtggtgatattcggag 2041
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5779
Number of Sequences: 1807
Number of extensions: 5779
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)