BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZD06RM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1659 1108 0.0
>3x_Contig1659
Length = 17570
Score = 1108 bits (559), Expect = 0.0
Identities = 565/567 (99%)
Strand = Plus / Plus
Query: 44 ctttatgatttgtgtagaggtagcagtcataagcagagaggaaaatcttatactctcacg 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12174 ctttatgatttgtgtagaggtagcagtcataagcagagaggaaaatcttatactctcacg 12233
Query: 104 tgatcagaaacagtagccacttcatcggagtccgaactgataacagttggtctttgatct 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12234 tgatcagaaacagtagccacttcatcggagtccgaactgataacagttggtctttgatct 12293
Query: 164 tttatgtcagctttcaaagccaaagcatatctgtatgcgttaacggatggttgtgttttg 223
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct: 12294 tttatgtcagctttcaaagccaaagcatagctgtatgcgttaacggatggttgtgtcttg 12353
Query: 224 tattgtaaacccaaagtatgtagttgttttgggaaagttgtagatttgatggttttcttt 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12354 tattgtaaacccaaagtatgtagttgttttgggaaagttgtagatttgatggttttcttt 12413
Query: 284 ggaatgtagcacttagaagaagtgtttaacaatttaatagagttggtgaacattttttct 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12414 ggaatgtagcacttagaagaagtgtttaacaatttaatagagttggtgaacattttttct 12473
Query: 344 tgatagttttgtgtgtaagtgatgctttttgatgaaatctgttgctattcaatagacttt 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12474 tgatagttttgtgtgtaagtgatgctttttgatgaaatctgttgctattcaatagacttt 12533
Query: 404 tgattgatgaggtgggagtgaatataatatacaatataaaagaacaacagatgacatcca 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12534 tgattgatgaggtgggagtgaatataatatacaatataaaagaacaacagatgacatcca 12593
Query: 464 taagttacaagacactcaactatgaaccagctccttatatatatttttccttgaaccaaa 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12594 taagttacaagacactcaactatgaaccagctccttatatatatttttccttgaaccaaa 12653
Query: 524 gatcccacatgttctttccaggtttcaagggccattggccgtaacctgattttgtaaata 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12654 gatcccacatgttctttccaggtttcaagggccattggccgtaacctgattttgtaaata 12713
Query: 584 gataagggacattggccgtagagtggg 610
|||||||||||||||||||||||||||
Sbjct: 12714 gataagggacattggccgtagagtggg 12740
Score = 190 bits (96), Expect = 3e-48
Identities = 172/188 (91%), Gaps = 7/188 (3%)
Strand = Plus / Plus
Query: 641 atagtactaatatttttt-atctttcgtccagaccaatatttattaatgcatttcgacgt 699
|||||||||||||||||| |||||||||||||||||||| ||| ||| ||||||||||||
Sbjct: 12773 atagtactaatatttttttatctttcgtccagaccaataattagtaaggcatttcgacgt 12832
Query: 700 atcgaatcaaaca-cttgaaatcaggaaatcc-aagcaaaag-agatac-ttagtccatt 755
|||||| |||||| ||||||||||||| |||| ||||||||| |||||| ||||||||||
Sbjct: 12833 atcgaagcaaacaccttgaaatcaggagatccaaagcaaaagaagatactttagtccatt 12892
Query: 756 gtggga-tatgcactttactatgagtagttacgttacgggattatctttga-ccaatttt 813
|| ||| ||||||||||||||||||||||||||||||| |||||||| ||| ||| ||||
Sbjct: 12893 gttggattatgcactttactatgagtagttacgttacgtgattatctctgatccactttt 12952
Query: 814 tttttttt 821
||||||||
Sbjct: 12953 tttttttt 12960
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,739
Number of Sequences: 1807
Number of extensions: 16739
Number of successful extensions: 418
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)