BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZD07FM1.SCF screened BAC_end
(890 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1536 1140 0.0
>3x_Contig1536
Length = 11572
Score = 1140 bits (575), Expect = 0.0
Identities = 617/629 (98%), Gaps = 2/629 (0%)
Strand = Plus / Plus
Query: 88 aggattcaatcaatttcttgaacaattgagggtctctgaaaattggtaagaaatcttcga 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8976 aggattcaatcaatttcttgaacaattgagggtctctgaaaattggtaagaaatcttcga 9035
Query: 148 ataggataccctcttgtgggaagtttgggtactgacgcaaagcacctttcaactcagtag 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9036 ataggataccctcttgtgggaagtttgggtactgacgcaaagcacctttcaactcagtag 9095
Query: 208 catattcagtgatagacatcttccacttgatattcttatgacaagtgcaataggttcttc 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9096 catattcagtgatagacatcttccacttgatattcttatgacaagtgcaataggttcttc 9155
Query: 268 ttcaatattgaaagtgaaacaccccctatacaagtactgtacaatgaaataattaataac 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9156 ttcaatattgaaagtgaaacaccccctatacaagtactgtacaatgaaataattaataac 9215
Query: 328 actgaataagagattacatatgaatcagttgccagtagttcctcatctttgatcctatgt 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9216 actgaataagagattacatatgaatcagttgccagtagttcctcatctttgatcctatgt 9275
Query: 388 gatgagcttcataaaaagtttttgaattttcggtattaattcagtctagcaaaatttcac 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9276 gatgagcttcataaaaagtttttgaattttcggtattaattcagtctagcaaaatttcac 9335
Query: 448 tctgtacatgtgccaaagaaaatgaaaacatacgacagcgctactcataaatgctgcana 507
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 9336 tctgtacatgtgccaaagaaaatgaaaacatacgacagcgctactcataaatgctgcaaa 9395
Query: 508 gaaaacggagattctggtcaattgctgagtataggatagtatatagtgtgggtctgtacc 567
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 9396 gaaaacggagattctggtcaattgctgagtataggatagtatatagtgtggttctgtacc 9455
Query: 568 agtgactactatggcatctcanagccattagtacgatttgggacgaaatgaattgaacaa 627
||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 9456 agtgactactatggcatctcagagccataagtacgatttgggacgaaatgaattgaacaa 9515
Query: 628 gcctgattactacgttgagttgacagagaaacatttgtctgacttttgaatattgaaact 687
|||||||||||||||||||||||||||||| ||||||||||||||| |||| || ||||
Sbjct: 9516 gcctgattactacgttgagttgacagagaagcatttgtctgactttgaaata-tggaact 9574
Query: 688 ctctttggctcgaatgaaaattatgatat 716
|||||| |||||||||| | |||||||||
Sbjct: 9575 ctcttt-gctcgaatgagagttatgatat 9602
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6912
Number of Sequences: 1807
Number of extensions: 6912
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 890
length of database: 10,358,551
effective HSP length: 16
effective length of query: 874
effective length of database: 10,329,639
effective search space: 9028104486
effective search space used: 9028104486
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)