BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZD07RM1.SCF screened BAC_end
(887 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1416 1223 0.0
>3x_Contig1416
Length = 10161
Score = 1223 bits (617), Expect = 0.0
Identities = 696/712 (97%), Gaps = 9/712 (1%)
Strand = Plus / Plus
Query: 49 attaaattccaccatataacagtgggttggttggcaaaagaataacgcaaattataatcg 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5491 attaaattccaccatataacagtgggttggttggcaaaagaataacgcaaattataatcg 5550
Query: 109 tcgtggtttggggtatattgtggttggaacttgtccatgaatccaaatggaccaaagtca 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5551 tcgtggtttggggtatattgtggttggaacttgtccatgaatccaaatggaccaaagtca 5610
Query: 169 atagaaagacctagaattgaagtgttgtctgtattcaagacaccgttacagaacccatat 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5611 atagaaagacctagaattgaagtgttgtctgtattcaagacaccgttacagaacccatat 5670
Query: 229 gcttgccagtatgccacacactctgcattcaacgtgactatgtgtctgaataatttatcg 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5671 gcttgccagtatgccacacactctgcattcaacgtgactatgtgtctgaataatttatcg 5730
Query: 289 taatttgtcaaaccatcatcgacctttgacgaacgtagctctttgttgttcacagtatca 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5731 taatttgtcaaaccatcatcgacctttgacgaacgtagctctttgttgttcacagtatca 5790
Query: 349 gacggttccttcgaaataatttgcactgaagctgtttaatgcaacagtgtctctgtagtc 408
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5791 gacg-ttccttcgaaataatttgcactgaagctgtttaatgcaacagtgtctctgtagtc 5849
Query: 409 tttcaatccttcgaaaacatgattgattgaaaagtctgctaatttcaagagaccctcatc 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5850 tttcaatccttcgaaaacatgattgattgaaaagtctgctaatttcaagagaccctcatc 5909
Query: 469 atcctgtttccatctaaacaaatcaaaattaccgattcttatccaacttggtgcaaatct 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5910 atcctgtttccatctaaacaaatcaaaattaccgattcttatccaacttggtgcaaatct 5969
Query: 529 cgttatcacagcgcaaggctcaaaaacagatcttcttgctctagtcttcggtagcgatga 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5970 cgttatcacagcgcaaggctcaaaaacagatcttcttgctctagtcttcggtagcgatga 6029
Query: 589 gatttgncatgccctagaagacngnataccaatggcgtgncaactctcacatatgagaaa 648
|||||| |||||||||||||| | |||||||||||||| |||||||||||||||||||
Sbjct: 6030 gatttgcaatgccctagaagacggaataccaatggcgtgcaaactctcacatatgagaaa 6089
Query: 649 ctctctaatacttgatctgactacagcttntcccgtcagcaaatctttgaatattggagn 708
||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||
Sbjct: 6090 ctctctaatacttgatctgactacagctt-tcccgtcagcaaatc-ttgaata-tggagt 6146
Query: 709 taaatccacctccctttttaactggacaggtttgcaggtttagattccttat 760
| |||||| ||||| |||||||||||| |||||||| |||||||||||||||
Sbjct: 6147 t-aatcca-ctccc-ttttaactggac-ggtttgca-gtttagattccttat 6193
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6431
Number of Sequences: 1807
Number of extensions: 6431
Number of successful extensions: 68
Number of sequences better than 1.0e-20: 1
length of query: 887
length of database: 10,358,551
effective HSP length: 16
effective length of query: 871
effective length of database: 10,329,639
effective search space: 8997115569
effective search space used: 8997115569
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)