BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC42ZD08FM1.SCF screened BAC_end (919 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1596 819 0.0 >3x_Contig1596 Length = 11686 Score = 819 bits (413), Expect = 0.0 Identities = 453/461 (98%), Gaps = 4/461 (0%) Strand = Plus / Minus Query: 87 ctaaggcaatgatttagcaatcatttgctgtttatttgtttacttattcattcacatttt 146 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 488 ctaaggcaatgatttagcaatcatttgctgtttatttgtttacttattcattcacatttt 429 Query: 147 tcagttttatttttttccatattcaactttcaacctggaaactactctcagacacaaagt 206 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 428 tcagttttatttttttccatattcaactttcaacctggaaactactctcagacacaaagt 369 Query: 207 aactggcatttatagatctgaattaaaggtcacgttttacggattcaagaattatctttt 266 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 368 aactggcatttagagatctgaattaaaggtcacgttttacggattcaagaattatctttt 309 Query: 267 cagtacatctccgggtaacaggttgaacagccccggagtccacagcacgtttttagactt 326 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 308 cagtacatctccgggtaacaggttgaacagccccggagtccacagcacgtttttagactt 249 Query: 327 cgattcgaactttattttaatttttactcgcagaacgcagttaagctacatatctagaga 386 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 248 cgattcgaactttattttaatttttactcgcagaacgcagttaagctacatatctagaga 189 Query: 387 acccagtataaaatatatgtgtacagagaaacagtggggagaggctttatagggtcggga 446 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 188 acccagtataaaatatatgtgtacagagaaacagtggggagaggctttaaagggtcggga 129 Query: 447 atttttgcagtggccttgggtgggtaaatgaagatccct-tttcacgatg-caaaggcct 504 | ||||||||||||||||||||||||||||||||||||| |||||||||| ||||| | | Sbjct: 128 a-ttttgcagtggccttgggtgggtaaatgaagatccctatttcacgatgccaaagccat 70 Query: 505 a-cccccacaaatgacttccttttcgtttttccatccaggg 544 | ||||||||||||||||||||||||||||||||||||||| Sbjct: 69 accccccacaaatgacttccttttcgtttttccatccaggg 29 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7728 Number of Sequences: 1807 Number of extensions: 7728 Number of successful extensions: 60 Number of sequences better than 1.0e-20: 1 length of query: 919 length of database: 10,358,551 effective HSP length: 16 effective length of query: 903 effective length of database: 10,329,639 effective search space: 9327664017 effective search space used: 9327664017 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)