BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZD08RM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1215 1168 0.0
>3x_Contig1215
Length = 7125
Score = 1168 bits (589), Expect = 0.0
Identities = 693/716 (96%), Gaps = 9/716 (1%)
Strand = Plus / Plus
Query: 43 gctttcggtaaattcacccaaattttcatctggaaagttcccaaaacattgaatttcatt 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3871 gctttcggtaaattcacccaaattttcatctggaaagttcccaaaacattgaatttcatt 3930
Query: 103 tctagatgaattttccaactcagattcagtcgcataaattgagcaaccgccttttccaac 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3931 tctagatgaattttccaactcagattcagtcgcataaattgagcaaccgccttttccaac 3990
Query: 163 ttcttctttgttaatcttgtcgtcagaaccgaacatcaaatctccagcttgaatcataaa 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3991 ttcttctttgttaatcttgtcgtcagaaccgaacatcaaatctccagcttgaatcataaa 4050
Query: 223 attcttaatgattctatggaagtgatttcttttatagcttaacactttaccattaagatt 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4051 attcttaatgattctatggaagtgatttcttttatagcttaacactttaccattaagatt 4110
Query: 283 gacatctcctctgcatagatgtataaagttagcacatgttttaggggcttgttcgtcgaa 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4111 gacatctcctctgcatagatgtataaagttagcacatgttttaggggcttgttcgtcgaa 4170
Query: 343 cagttcgcatacgattcggcctattggctcatcgccgatcttaatatcaagatatacttt 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4171 cagttcgcatacgattcggcctattggctcatcgccgatcttaatatcaagatatacttt 4230
Query: 403 gtgcatttcaacaatgaattcaatcttacaggaggagcagttatcctttttgacctatta 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4231 gtgcatttcaacaatgaattcaatcttacaggaggagcagttatcctttttgacctatta 4290
Query: 463 ccttatctttttctattgttactttgaccacagctataaagcgcaacttagctttggaac 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4291 ccttatctttttctattgttactttgaccacagctataaagcgcaacttagctttggaac 4350
Query: 523 aaggaggctttaactgatgggatgaggtatttcgttctcatctcatcactgttcttaaac 582
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 4351 aaggaggctttaactgatgggatgaggta-ttcgttctcatctcatcactgttcttaaac 4409
Query: 583 tagctngtcatttcgt-atgtcaaattcgtagatcattttgtccgggtaggaaac-ttta 640
||||| ||| ||||| |||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 4410 tagctgttca-ttcgtaatgtcaaattcgtagatcattttgtccgggtaagaaactttta 4468
Query: 641 ttcaaggtcaagcgattctggttattgggacctccgaatcaaacaaaactttggggaaca 700
| ||| ||| |||| ||||| |||||||||||| |||||||||||||||| |||||||
Sbjct: 4469 tcaaagttcaggcga-tctgg-tattgggacctcgaaatcaaacaaaacttt-gggaaca 4525
Query: 701 gtgtgattaggtaagttagaggggagaaggaaaaggaggataaaggaaagactttt 756
|||||| ||||||||| ||| |||||||||| |||||| | ||||||| |||||||
Sbjct: 4526 gtgtga-taggtaagtaaga-gggagaaggagaaggagaagaaaggaaggactttt 4579
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8362
Number of Sequences: 1807
Number of extensions: 8362
Number of successful extensions: 70
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)