BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZD09FM1.SCF screened BAC_end
(956 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig698 1134 0.0
>3x_Contig698
Length = 2551
Score = 1134 bits (572), Expect = 0.0
Identities = 697/726 (96%), Gaps = 11/726 (1%)
Strand = Plus / Plus
Query: 86 atgtttggtcttctcatgtatgcagatgcaggctaggatcaacaagcaatcgcgatccat 145
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34 atgtttggtcttctcatgtatgcagatgcaggctaggatcaacaagcaatcgcgatccag 93
Query: 146 gcacccgttacataccaatcgtcaattaaaaagcgagcgactaagtgataagttgtatgc 205
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 94 gcacccgttacataccaatcgtcaattaaacagcgagcgactaagtgataagttgtatgc 153
Query: 206 gtgatcccatttttttctattaaacttctgcgtattggcactttagaatcatattctgtt 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 gtgatcccatttttttctattaaacttctgcgtattggcactttagaatcatattctgtt 213
Query: 266 gaaaagggaagctgagataagttcagacgcatatacagttagataatggattccagtttc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 gaaaagggaagctgagataagttcagacgcatatacagttagataatggattccagtttc 273
Query: 326 ggaacaaatgggttctatacacatactccatcgatgtggagtgatagtaggcgtaggaac 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 ggaacaaatgggttctatacacatactccatcgatgtggagtgatagtaggcgtaggaac 333
Query: 386 gttggaaatagagataaagactcgtt-cagaggaggaataagcgatcgaagaaatgaaga 444
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 334 gttggaaatagagataaagactcgttacagaggaggaataagcgatcgaagaaatgaaga 393
Query: 445 gatcaacaaaccaaaagaagatccattttgtatatccggtttttccaattacacaggata 504
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 394 gatcaacaaaccaaaagaagatccattttgtatatccggtttttccaattacacaggaaa 453
Query: 505 atcgaagtcaagcactagtagagcaaagattggcccagcgagtgaatcgattaaggagct 564
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 454 atcgaagtcaagcactagtagagcaaagaatggcccagcgagtgaatcgattaaggagct 513
Query: 565 accttttgatttctactgaagttctcgatgcagccagtcagagaagattagccttcgtcg 624
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 acc-tttgatttctactgaagttctcgatgcagccagtcagagaagattagccttcgtcg 572
Query: 625 ttttttttatcatt-aatgctacaaactatacgatctaatnctactttagagtgggattc 683
|||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||| |
Sbjct: 573 ttttttttatcattcaatgctacaaactatacgatctaatcctacttaagagtgggatac 632
Query: 684 ca-tatctggggattttctatcgaatttcaaggtaaaacttcattt-aaaaaatttggga 741
|| |||||||| |||||||||||| |||||||| ||||||||||| |||| |||||| |
Sbjct: 633 cattatctgggatttttctatcgaa-ttcaaggttaaacttcatttcaaaatatttggta 691
Query: 742 ataaaactctttggtccttttaccggcccccccaacgttc-aaataccccaattaaagtt 800
|| | ||||||| || ||||||| | | |||| |||||| |||||||| ||||||||||
Sbjct: 692 at-agactcttt-gttcttttactgtctcccc--acgttcaaaatacccaaattaaagtt 747
Query: 801 caaacc 806
||||||
Sbjct: 748 caaacc 753
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6443
Number of Sequences: 1807
Number of extensions: 6443
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 956
length of database: 10,358,551
effective HSP length: 16
effective length of query: 940
effective length of database: 10,329,639
effective search space: 9709860660
effective search space used: 9709860660
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)