BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC42ZD09RM1.SCF screened BAC_end
         (941 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1629                                                        1235   0.0  

>3x_Contig1629 
          Length = 12481

 Score = 1235 bits (623), Expect = 0.0
 Identities = 736/766 (96%), Gaps = 8/766 (1%)
 Strand = Plus / Minus

                                                                        
Query: 45   gcttccaagaaagacccacagaggtttgagaaaggttgcttgtatcggtgcttggcatcc 104
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9613 gcttccaagaaagacccacagaggtttgagaaaggttgcttgtatcggtgcttggcatcc 9554

                                                                        
Query: 105  agcccacgttatgtggtccgttgctagagctggtcaaagaggttaccaccacagaacctc 164
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9553 agcccacgttatgtggtccgttgctagagctggtcaaagaggttaccaccacagaacctc 9494

                                                                        
Query: 165  tattaaccacaaggtctacagagttggtaagggtgacgacgaagctaacgccgctaccta 224
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 9493 tattaaccacaaggtctacagagttggtaagggtgacgacgaagctaacgccgctaccga 9434

                                                                        
Query: 225  attcgacagaaccaagaagaccatcaccccaatgggtggtttcgtccactacggtgctat 284
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9433 attcgacagaaccaagaagaccatcaccccaatgggtggtttcgtccactacggtgctat 9374

                                                                        
Query: 285  caacaatgatttcgttatcttgaagggttctatcccaggtaccagaaagagagttgttac 344
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9373 caacaatgatttcgttatcttgaagggttctatcccaggtaccagaaagagagttgttac 9314

                                                                        
Query: 345  tttaagaaagtccttgtacaccaacacctccagaaagggccttggaagaagttaccttga 404
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 9313 tttaagaaagtccttgtacaccaacacctccagaaa-ggccttggaagaagttaccttga 9255

                                                                        
Query: 405  agtggatcgacactgcttctaagttcggtaagggtagattccaaaccccagctgaaaagc 464
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9254 agtggatcgacactgcttctaagttcggtaagggtagattccaaaccccagctgaaaagc 9195

                                                                        
Query: 465  acgctttcttgggtactttgaagaaggacttataaactcctcaactctaatagagtcgaa 524
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9194 acgctttcttgggtactttgaagaaggacttataaactcctcaactctaatagagtcgaa 9135

                                                                        
Query: 525  ttgagtaaaaagctttgcatgctgtaattttatagactagttttggagtactcaagaaag 584
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9134 ttgagtaaaaagctttgcatgctgtaattttatagactagttttggagtactcaagaaag 9075

                                                                        
Query: 585  tgtttacactttctttcactatcccatcggctggttcataatatttnctgntgntttgac 644
            |||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||
Sbjct: 9074 tgtttacactttctttcactatcccatcggctggttcataatatttcctgttgttttgac 9015

                                                                        
Query: 645  aactatctttaaatatgaaaatattagcatttgaattaattattatttacacgcgctttc 704
            ||||||||||||||||||||||||||||||||||| ||| || || |||||||||| |||
Sbjct: 9014 aactatctttaaatatgaaaatattagcatttgaa-taaataataattacacgcgc-ttc 8957

                                                                        
Query: 705  cttcttgcgaggttatttttcttggaaagccactggagaagcctncgcggttctcattaa 764
            |||||||| | |||||||||| |||| |  ||||| || ||||| ||||||  |||| ||
Sbjct: 8956 cttcttgc-aagttatttttc-tggagaagcactgaag-agcctccgcggtcttcatcaa 8900

                                                          
Query: 765  acggcttttttttcttgctttttttcccatgattggaatactgttt 810
               ||||| || ||||||| ||||||| ||||||||| ||||||||
Sbjct: 8899 --cgctttcttctcttgctctttttccgatgattggagtactgttt 8856


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7167
Number of Sequences: 1807
Number of extensions: 7167
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)