BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC42ZD10FM1.SCF screened BAC_end
         (881 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1804                                                        1035   0.0  

>3x_Contig1804 
          Length = 51183

 Score = 1035 bits (522), Expect = 0.0
 Identities = 607/626 (96%), Gaps = 7/626 (1%)
 Strand = Plus / Minus

                                                                         
Query: 87    gcagcttgatttcttctgatttcagctggttcagagactacaatcttggaggcaccatga 146
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22796 gcagcttgatttcttctgatttcagctggttcagagactacaatcttggaggcaccatga 22737

                                                                         
Query: 147   ccttgcaaagctaaaatggtggctaatccaattggacctgcgccaagaactaaggcggat 206
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22736 ccttgcaaagctaaaatggtggctaatccaattggacctgcgccaagaactaaggcggat 22677

                                                                         
Query: 207   tggcccttctgtaacttggagattctaacagcatgccatgagacggagattggttcgact 266
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22676 tggcccttctgtaacttggagattctaacagcatgccatgagacggagattggttcgact 22617

                                                                         
Query: 267   aaggctgcaacgtccaatggtaaagtgtttggaatcttaacaacgtgcttttcactaaca 326
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22616 aaggctgcaacgtccaatggtaaagtgtttggaatcttaacaacgtgcttttcactaaca 22557

                                                                         
Query: 327   acgactttttcagcaaaaccaccactgtgaactcctagacccatgaaacccaaatgggca 386
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22556 acgactttttcagcaaaaccaccactgtgaactcctagacccatgaaacccaaatgggca 22497

                                                                         
Query: 387   caacagttgtagaaccctctttgacaagcagcacattcagcatccttagcatgtgcagcg 446
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22496 caacagttgtagaaccctctttgacaagcagcacattcagcatccttagcatgtgcagcg 22437

                                                                         
Query: 447   ttaggccaagtgtaatgatcaagacatgtaccggtggcttctacaac-acatgatcacca 505
             ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 22436 ttaggccaagtgtaatgatcaagacatgtaccggtggcttctacaacaacatgatcacca 22377

                                                                         
Query: 506   gccttgatgttggttacttttggtccaacttttgatacgataccggacatctcatgaccc 565
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22376 gccttgatgttggttacttttggtccaacttttgatacgataccggacatctcatgaccc 22317

                                                                         
Query: 566   atatccttgaggcaattcaagaacacttaacattgtggaccctgccattcttct-gaaag 624
             |||  ||||||||||| ||||| ||| |||||| ||||||| ||||| |||||| |||||
Sbjct: 22316 ata-gcttgaggcaatccaagaccac-taacatcgtggaccttgcca-tcttctggaaag 22260

                                                                         
Query: 625   aaaataggaccatcttagtatttgtgtaaattactaccgcagat-ccacaccatgagact 683
             |||||||||||||||  ||||| |||||||| |||||||||||| |||||||||||||| 
Sbjct: 22259 aaaataggaccatctaggtattcgtgtaaatcactaccgcagataccacaccatgagac- 22201

                                       
Query: 684   ttcgaatccaattccattatctgttt 709
             ||||| | ||||||||| ||||||||
Sbjct: 22200 ttcgatttcaattccatcatctgttt 22175


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5969
Number of Sequences: 1807
Number of extensions: 5969
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 881
length of database: 10,358,551
effective HSP length: 16
effective length of query: 865
effective length of database: 10,329,639
effective search space: 8935137735
effective search space used: 8935137735
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)