BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZD10RM1.SCF screened BAC_end
(864 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1764 1104 0.0
>3x_Contig1764
Length = 22510
Score = 1104 bits (557), Expect = 0.0
Identities = 658/685 (96%), Gaps = 6/685 (0%)
Strand = Plus / Minus
Query: 54 aaaaaaagtgttgtgatatgtcaaagagtattcaggaaatggtgcatttcaacaggtttc 113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12848 aaaaaaagtgttgtgatatgtcaaagagtattcaggaaatggtgcatttcaacaggtttc 12789
Query: 114 aattgagtttatggtattagatcagctctgtaatgctaaaaaattcagaaattgtgttag 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12788 aattgagtttatggtattagatcagctctgtaatgctaaaaaattcagaaattgtgttag 12729
Query: 174 aaggagtttcataacggatatggatgattaaatctgccaggagcggggtgcgtgtcagat 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12728 aaggagtttcataacggatatggatgattaaatctgccaggagcggggtgcgtgtcagat 12669
Query: 234 ttatcacttcttatataaaaaaactagctttcgaggatgcgtcctgttccctgctactct 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12668 ttatcacttcttatataaaaaaactagctttcgaggatgcgtcctgttccctgctactct 12609
Query: 294 ccacttcatcctgagtaatagacattcatcaatcacagcactaattcgctgaacagtcaa 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12608 ccacttcatcctgagtaatagacattcatcaatcacagcactaattcgctgaacagtcaa 12549
Query: 354 ttattaaaaaatgactgaagaatgtttaaaagaagttgcaactttttccaacctctcaga 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12548 ttattaaaaaatgactgaagaatgtttaaaagaagttgcaactttttccaacctctcaga 12489
Query: 414 tcccacaagaacgaacagtatcgatactacagctgatgttactcttcccaaaaatgagtt 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12488 tcccacaagaacgaacagtatcgatactacagctgatgttactcttcccaaaaatgagtt 12429
Query: 474 aaaacagtcaattaaaccgtttcatgttttcatgatgtcntactgc-acaggtattgnga 532
||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||
Sbjct: 12428 aaaacagtcaattaaaccgtttcatgttttcatgatgtc-tactgcaacaggtattggga 12370
Query: 533 ccggtttattatgtgggaacggtagatcatttgctattgcngnggttggtgggtac-tta 591
||||||||||| ||||||||||||||| |||||||||| | ||||||| ||||| |||
Sbjct: 12369 ccggtttattagtggggaacggtagatcaattgctattgcgggggttggt-ggtacttta 12311
Query: 592 gtttggtactaattnattggta-tatgttgacatgttgcatgcaaactgttggtgagctt 650
||| | |||| | | ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 12310 gttggttacttaattattggtattatgttgacatgttgcatgcaaactgttggtgagctt 12251
Query: 651 gttgttgctttttc-agtatgccctgtgggtttacatcttattgaaagcgtttcatttac 709
|||||||||||| | |||||||| ||||||||||||||||| ||||||||||||| ||
Sbjct: 12250 gttgttgcttttccaagtatgcctggtgggtttacatcttatggaaagcgtttcatagac 12191
Query: 710 ccctctgggggctttaccacttctt 734
|| |||| ||||||||||| |||||
Sbjct: 12190 ccgtctgtgggctttaccatttctt 12166
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7540
Number of Sequences: 1807
Number of extensions: 7540
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 864
length of database: 10,358,551
effective HSP length: 16
effective length of query: 848
effective length of database: 10,329,639
effective search space: 8759533872
effective search space used: 8759533872
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)