BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZD12FM1.SCF screened BAC_end
(957 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1731 1047 0.0
>3x_Contig1731
Length = 24233
Score = 1047 bits (528), Expect = 0.0
Identities = 578/588 (98%), Gaps = 5/588 (0%)
Strand = Plus / Plus
Query: 82 tacattggtaacgaagagtttggcatatttaacgtggattcgataacagctgatactctt 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15513 tacattggtaacgaagagtttggcatatttaacgtggattcgataacagctgatactctt 15572
Query: 142 gttggtgcctctggctgatcctactcttggtattttctttctctgcttctcaaaagacaa 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15573 gttggtgcctctggctgatcctactcttggtattttctttctctgcttctcaaaagacaa 15632
Query: 202 gctcatcatataactcataagctcatcgcatcttttcaattatttgtctaatgtggattc 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15633 gctcatcatataactcataagctcatcgcatcttttcaattatttgtctaatgtggattc 15692
Query: 262 ttttttttcaccgtatgtagaattgtagttttggaaaattttatggttgaaacctgtgca 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15693 ttttttttcaccgtatgtagaattgtagttttggaaaattttatggttgaaacctgtgca 15752
Query: 322 ggacgaggatttgaaaagaaacgatggtcatctctatcgtgagaagtgacatataagggc 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15753 ggacgaggatttgaaaagaaacgatggtcatctctatcgtgagaagtgacatataagggc 15812
Query: 382 atctaatgaaaaatttggaaccgatgaaaaattaaagtattaagaattaagaaagctggt 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15813 atctaatgaaaaatttggaaccgatgaaaaattaaagtattaagaattaagaaagctggt 15872
Query: 442 tgaatatgatgatttgtgatgcaaattatatgagttttcaaaa-gtcgagcaggttttga 500
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 15873 tgaatatgatgatttgtgatgcaaattatatgagttttcaaaaggtcgagcaggttttga 15932
Query: 501 tccacttattgtgatagtttataaatctcggangggtttattccaggttttccaggtttc 560
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 15933 tccacttattgtgatagtttataaatctcgga-gggtttattccagg-tttccaggtttc 15990
Query: 561 taaggttttttttcgtttcgatttacttttaaagaaagatgattgttccagttagatgtt 620
| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct: 15991 t-aggttttttttcgtttcgatatacttttaaagagagatgattgttccagttagatgtt 16049
Query: 621 tttcctgtgggaaaagtggtccgtgacaaatgggaggcctatttgaat 668
||||||||||| ||||| ||| ||||||||||||| ||||||||||||
Sbjct: 16050 tttcctgtggg-aaagttgtcggtgacaaatgggaagcctatttgaat 16096
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,871
Number of Sequences: 1807
Number of extensions: 10871
Number of successful extensions: 80
Number of sequences better than 1.0e-20: 1
length of query: 957
length of database: 10,358,551
effective HSP length: 16
effective length of query: 941
effective length of database: 10,329,639
effective search space: 9720190299
effective search space used: 9720190299
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)