BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZD12RM1.SCF screened BAC_end
(929 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1338 1370 0.0
>3x_Contig1338
Length = 8134
Score = 1370 bits (691), Expect = 0.0
Identities = 842/878 (95%), Gaps = 11/878 (1%)
Strand = Plus / Plus
Query: 45 cttaccccaggtttaaagaccttctctactttttctacaaatataggtaactttaagaca 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6128 cttaccccaggtttaaagaccttctctactttttctacaaatataggtaactttaagaca 6187
Query: 105 atgactttagactgtcgacgagtactttccatcagggtctattcctcgtgatattttacg 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6188 atgactttagactgtcgacgagtactttccatcagggtctattcctcgtgatattttacg 6247
Query: 165 gtctctcgtctctgtttcgaaatttgcaagccaacttgcatgcagtctttcaatgactct 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6248 gtctctcgtctctgtttcgaaatttgcaagccaacttgcatgcagtctttcaatgactct 6307
Query: 225 ttgaattgactgttacaattcataggcaataacaagggtcctaagatgacttccgaaggg 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6308 ttgaattgactgttacaattcataggcaataacaagggtcctaagatgacttccgaaggg 6367
Query: 285 ttcactgccaacttacactagtaatacttcttcagctatgctttatcagcaaagtccata 344
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 6368 ttcactgccaacttacactagtaatacttcttcagctatgctttagcagcaaagtccata 6427
Query: 345 catattgtgcatggaatcggtaagaaataaacgatatataaacagtgaacaaataccgtg 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6428 catattgtgcatggaatcggtaagaaataaacgatatataaacagtgaacaaataccgtg 6487
Query: 405 gatttctgtcattgaatcaagatcatcttgctctcaatcatggttgtggttgaagcgtga 464
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 6488 gatttctgtcattgaatcaggatcatcttgctctcaatcatggttgtggttgaagcgtga 6547
Query: 465 attttgttacagcattagatcttacaaaccagcaaaccaacattataaaagtttggcaat 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6548 attttgttacagcattagatcttacaaaccagcaaaccaacattataaaagtttggcaat 6607
Query: 525 ggcagattccgacaaacgcagggccgaagttgatgtgaaaagggtttcgatatcaagttt 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6608 ggcagattccgacaaacgcagggccgaagttgatgtgaaaagggtttcgatatcaagttt 6667
Query: 585 tgatgtcgaaatccgttctcaagattccttaacttctgantatcccttcagtgatccaaa 644
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 6668 tgatgtcgaaatccgttctcaagattccttaacttctgataatcccttcagtgatccaaa 6727
Query: 645 aatcgcagaatactatcgtgcattatacgatgacagtaagtacgatagtagaagtgcgtt 704
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 6728 aatcgcagaatactatcgtgcattatacgatgacagtaagtacgagagtagaagtgcgtt 6787
Query: 705 tgatcca-aatttacatggnacaaagga-gaagatcaaaaagtcgttcggaaattg-aca 761
||||||| | || |||||| |||||||| ||||| ||||||||||||||||||||| |||
Sbjct: 6788 tgatccagagttcacatgg-acaaaggaggaagaacaaaaagtcgttcggaaattgaaca 6846
Query: 762 tca-aaatgcgttggttgcgggctacttatttgttgctcttaaattaaatcggggtattc 820
||| | ||||||||||||| |||||||||||||||||||| ||||| |||| |||| ||
Sbjct: 6847 tcagagttgcgttggttgcgtgctacttatttgttgctcttcaattagatcgtggtaatc 6906
Query: 821 tatc-caggcttggggcgat-atttacttg-agaattgggttttaaca-aaatgatt-cc 875
|||| |||||| || |||| || |||||| ||| |||||| | |||| |||||||| |
Sbjct: 6907 tatcacaggctgtggtcgataatctacttgaagatttgggtatgaacagaaatgattaca 6966
Query: 876 atttaggtaatcaaatcttttaaatc-cctttttacta 912
||||||||||||||||||| || ||| |||||||||||
Sbjct: 6967 atttaggtaatcaaatcttctacatctcctttttacta 7004
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6578
Number of Sequences: 1807
Number of extensions: 6578
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)