BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZE01FM1.SCF screened BAC_end
(997 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1649 878 0.0
>3x_Contig1649
Length = 14442
Score = 878 bits (443), Expect = 0.0
Identities = 465/471 (98%), Gaps = 1/471 (0%)
Strand = Plus / Minus
Query: 95 gtctgaagctgcttctttaagagagctgggcaggtcgacgagttgaaggatcttgaaatg 154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3811 gtctgaagctgcttctttaagagagctgggcaggtcgacgagttgaaggatcttgaaatg 3752
Query: 155 taaaaagggcttaattcgttaagaaaaggaatgaattgtctatgtcctagatttattgct 214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3751 taaaaagggcttaattcgttaagaaaaggaatgaattgtctatgtcctagatttattgct 3692
Query: 215 aatagcatattattcattatactaacttcgaattctcgttcctcaggtataggaattttg 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3691 aatagcatattattcattatactaacttcgaattctcgttcctcaggtataggaattttg 3632
Query: 275 aaactttgttccaaattaatcattgtttcgtctggtatagccttagcaacattaatatag 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3631 aaactttgttccaaattaatcattgtttcgtctggtatagccttagcaacattaatatag 3572
Query: 335 ttcaagttcatattattaccatcacaccataacctcctctggatcattggatgaatataa 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3571 ttcaagttcatattattaccatcacaccataacctcctctggatcattggatgaatataa 3512
Query: 395 tccatagctaacttttgagacacagtcaaaaaattatcatagagtttgccgaccaaagat 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3511 tccatagctaacttttgagacacagtcaaaaaattatcatagagtttgccgaccaaagat 3452
Query: 455 attctcaaattcggatgatgaaataagagtttatcaagtacattcattagctcttttctt 514
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 3451 atcctcaaattcggatgatgaaataagagtttatcaagtacattcataagctcttttctt 3392
Query: 515 ttaggcccgtcgggatttcgattatttcctataagtagataaaacttcttg 565
| ||||||||||||||| ||| || ||||||||||||||||||||||||||
Sbjct: 3391 tcaggcccgtcgggattccga-taattcctataagtagataaaacttcttg 3342
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8745
Number of Sequences: 1807
Number of extensions: 8745
Number of successful extensions: 70
Number of sequences better than 1.0e-20: 1
length of query: 997
length of database: 10,358,551
effective HSP length: 16
effective length of query: 981
effective length of database: 10,329,639
effective search space: 10133375859
effective search space used: 10133375859
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)