BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZE01RM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1793 1324 0.0
3x_Contig1803 283 3e-76
3x_Contig990 252 1e-66
>3x_Contig1793
Length = 40499
Score = 1324 bits (668), Expect = 0.0
Identities = 845/890 (94%), Gaps = 11/890 (1%)
Strand = Plus / Minus
Query: 45 ctttaaatattggaatatctcagtataaattgccaacggatgatatattactatcttcta 104
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 9842 ctttaaatattggaatatctcagtagaaattgccaacggatgatatattactatcttcta 9783
Query: 105 ctatttataacattatcatagttgttatgtatctctgaaaatgtatataatatatacaag 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9782 ctatttataacattatcatagttgttatgtatctctgaaaatgtatataatatatacaag 9723
Query: 165 accctaaactttttatccaaagaatgtaaggaaaaaaaaaaaatgcaaaaaaaaaaaaaa 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9722 accctaaactttttatccaaagaatgtaaggaaaaaaaaaaaatgcaaaaaaaaaaaaaa 9663
Query: 225 ttgaattgagtataaatgatacaacggctttgcgtggtctcaagctcgttaataaactcc 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9662 ttgaattgagtataaatgatacaacggctttgcgtggtctcaagctcgttaataaactcc 9603
Query: 285 ctatcgagtttcactccagtaatcggaaatatgaaataaatctttaccattagatgccac 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9602 ctatcgagtttcactccagtaatcggaaatatgaaataaatctttaccattagatgccac 9543
Query: 345 ctcttaatctcaagacaagatgtaaagtggattccttttggatgttatagtcagacaagg 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9542 ctcttaatctcaagacaagatgtaaagtggattccttttggatgttatagtcagacaagg 9483
Query: 405 ttctgccatcttccaactgcttacctgcaaaaattaatctttgttggtctggaggaatac 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9482 ttctgccatcttccaactgcttacctgcaaaaattaatctttgttggtctggaggaatac 9423
Query: 465 cttctttgtcttgaatcttagacttgacgttatcgatggtgtcggaagattcgacttcca 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9422 cttctttgtcttgaatcttagacttgacgttatcgatggtgtcggaagattcgacttcca 9363
Query: 525 aagtgatggtcttaccagtcaaggttttgacgaaaatttgcataccacctcttaatctca 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9362 aagtgatggtcttaccagtcaaggttttgacgaaaatttgcataccacctcttaatctca 9303
Query: 585 agaacagatgtaaagtggattcccttttggatgttatagtcagacaaagttctgccatct 644
||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct: 9302 agacaagatgtaaagtggatt-ccttttggatgttatagtcagacaaggttctgccatct 9244
Query: 645 ttcaactgcttacctgcaaaaatt-atctttgntggtctggaaggataccctncttgtct 703
| |||||||||||||||||||||| ||||||| ||||||||| ||||||| | ||||||
Sbjct: 9243 tccaactgcttacctgcaaaaattaatctttgttggtctggagggataccttctttgtct 9184
Query: 704 tgaatc-taaacttgacg-tatccatgtggtcgg-agattcgacttccaaatggatggtc 760
|||||| || |||||||| |||| ||| ||||| |||||||||||||||| |||||||
Sbjct: 9183 tgaatcttagacttgacgttatcgatggtgtcggaagattcgacttccaaagtgatggtc 9124
Query: 761 ttaccggtttaagttttgaccaaaatttgcatacccctttttattct-aaaacaagatgc 819
||||||||| | |||||||| |||||||||||||| | | ||| ||| ||||||||||||
Sbjct: 9123 ttaccggttaaggttttgacgaaaatttgcataccacctcttaatctcaaaacaagatgc 9064
Query: 820 aaag-ggattccttttgggatgttgtaattcggacaaagttttggcatttttccactggt 878
|||| ||||| ||||| ||||||||||| |||||||| ||| || ||| || | ||| |
Sbjct: 9063 aaagtggatt-ctttttggatgttgtaa-tcggacaaggttctgccatcttccaact-gc 9007
Query: 879 ttacttgcaaaaattaatctttgttggtctggaagggaaaccttttttgt 928
|||| ||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct: 9006 ttacctgcaaaaattaatctttgttggtctgg-agggataccttctttgt 8958
Score = 674 bits (340), Expect = 0.0
Identities = 541/594 (91%), Gaps = 11/594 (1%)
Strand = Plus / Minus
Query: 341 ccacctcttaatctcaagacaagatgtaaagtggattccttttggatgttatagtcagac 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9318 ccacctcttaatctcaagacaagatgtaaagtggattccttttggatgttatagtcagac 9259
Query: 401 aaggttctgccatcttccaactgcttacctgcaaaaattaatctttgttggtctggagga 460
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9258 aaggttctgccatcttccaactgcttacctgcaaaaattaatctttgttggtctggaggg 9199
Query: 461 ataccttctttgtcttgaatcttagacttgacgttatcgatggtgtcggaagattcgact 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9198 ataccttctttgtcttgaatcttagacttgacgttatcgatggtgtcggaagattcgact 9139
Query: 521 tccaaagtgatggtcttaccagtcaaggttttgacgaaaatttgcataccacctcttaat 580
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 9138 tccaaagtgatggtcttaccggttaaggttttgacgaaaatttgcataccacctcttaat 9079
Query: 581 ctcaagaacagatgtaaagtggattcccttttggatgttatagtcagacaaagttctgcc 640
||||| | ||||| ||||||||||| ||||||||||| || || ||||| ||||||||
Sbjct: 9078 ctcaaaacaagatgcaaagtggattct-ttttggatgttgtaatcggacaaggttctgcc 9020
Query: 641 atctttcaactgcttacctgcaaaaatta-tctttgntggtctggaaggataccctnctt 699
||||| ||||||||||||||||||||||| |||||| ||||||||| ||||||| | ||
Sbjct: 9019 atcttccaactgcttacctgcaaaaattaatctttgttggtctggagggataccttcttt 8960
Query: 700 gtcttgaatctaa-acttgacgt-atccatgtggtcgga-gattcgacttccaaatggat 756
||||||||||| | ||||||||| ||| ||| |||||| ||||||||||||||| |||
Sbjct: 8959 gtcttgaatcttagacttgacgttatcgatggtgtcggaagattcgacttccaaagtgat 8900
Query: 757 ggtcttaccggtttaagttttgaccaaaatttgcatacccctttttattct-aaaacaag 815
||||||||||||| | |||||||| |||||||||||||| | | ||| ||| ||||||||
Sbjct: 8899 ggtcttaccggttaaggttttgacgaaaatttgcataccacctcttaatctcaaaacaag 8840
Query: 816 atgcaaag-ggattccttttgggatgttgtaattcggacaaagttttggcatttttccac 874
|||||||| |||||| |||||| |||||||||| ||||||| ||| || ||| || | ||
Sbjct: 8839 atgcaaagtggattctttttgg-atgttgtaat-cggacaaggttctgccatcttccaac 8782
Query: 875 tggtttacttgcaaaaattaatctttgttggtctggaagggaaaccttttttgt 928
|| || || ||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct: 8781 tgctt-acctgcaaaaattaatctttgttggtctgg-agggataccttctttgt 8730
Score = 581 bits (293), Expect = e-165
Identities = 353/371 (95%), Gaps = 2/371 (0%)
Strand = Plus / Minus
Query: 341 ccacctcttaatctcaagacaagatgtaaagtggattccttttggatgttatagtcagac 400
||||||||||||||||| |||||||| ||||||||||| ||||||||||| || || |||
Sbjct: 8862 ccacctcttaatctcaaaacaagatgcaaagtggattctttttggatgttgtaatcggac 8803
Query: 401 aaggttctgccatcttccaactgcttacctgcaaaaattaatctttgttggtctggagga 460
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8802 aaggttctgccatcttccaactgcttacctgcaaaaattaatctttgttggtctggaggg 8743
Query: 461 ataccttctttgtcttgaatcttagacttgacgttatcgatggtgtcggaagattcgact 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8742 ataccttctttgtcttgaatcttagacttgacgttatcgatggtgtcggaagattcgact 8683
Query: 521 tccaaagtgatggtcttaccagtcaaggttttgacgaaaatttgcataccacctcttaat 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8682 tccaaagtgatggtcttaccagtcaaggttttgacgaaaatttgcataccacctcttaat 8623
Query: 581 ctcaagaacagatgtaaagtggattcccttttggatgttatagtcagacaaagttctgcc 640
||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct: 8622 ctcaagacaagatgtaaagtggatt-ccttttggatgttatagtcagacaaggttctgcc 8564
Query: 641 atctttcaactgcttacctgcaaaaatt-atctttgntggtctggaaggataccctnctt 699
||||| |||||||||||||||||||||| ||||||| ||||||||| ||||||| | ||
Sbjct: 8563 atcttccaactgcttacctgcaaaaattaatctttgttggtctggagggataccttcttt 8504
Query: 700 gtcttgaatct 710
|||||||||||
Sbjct: 8503 gtcttgaatct 8493
Score = 579 bits (292), Expect = e-165
Identities = 529/594 (89%), Gaps = 11/594 (1%)
Strand = Plus / Minus
Query: 341 ccacctcttaatctcaagacaagatgtaaagtggattccttttggatgttatagtcagac 400
||||||||||||||||| |||||||| ||||||||||| ||||||||||| || || |||
Sbjct: 9090 ccacctcttaatctcaaaacaagatgcaaagtggattctttttggatgttgtaatcggac 9031
Query: 401 aaggttctgccatcttccaactgcttacctgcaaaaattaatctttgttggtctggagga 460
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9030 aaggttctgccatcttccaactgcttacctgcaaaaattaatctttgttggtctggaggg 8971
Query: 461 ataccttctttgtcttgaatcttagacttgacgttatcgatggtgtcggaagattcgact 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8970 ataccttctttgtcttgaatcttagacttgacgttatcgatggtgtcggaagattcgact 8911
Query: 521 tccaaagtgatggtcttaccagtcaaggttttgacgaaaatttgcataccacctcttaat 580
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 8910 tccaaagtgatggtcttaccggttaaggttttgacgaaaatttgcataccacctcttaat 8851
Query: 581 ctcaagaacagatgtaaagtggattcccttttggatgttatagtcagacaaagttctgcc 640
||||| | ||||| |||||||||| | ||||||||||| || || ||||| ||||||||
Sbjct: 8850 ctcaaaacaagatgcaaagtggatt-ctttttggatgttgtaatcggacaaggttctgcc 8792
Query: 641 atctttcaactgcttacctgcaaaaatt-atctttgntggtctggaaggataccctnctt 699
||||| |||||||||||||||||||||| ||||||| ||||||||| ||||||| | ||
Sbjct: 8791 atcttccaactgcttacctgcaaaaattaatctttgttggtctggagggataccttcttt 8732
Query: 700 gtcttgaatc-taaacttgacg-tatccatgtggtcgg-agattcgacttccaaatggat 756
|||||||||| || |||||||| |||| ||| ||||| |||||||||||||||| |||
Sbjct: 8731 gtcttgaatcttagacttgacgttatcgatggtgtcggaagattcgacttccaaagtgat 8672
Query: 757 ggtcttaccggtttaagttttgaccaaaatttgcatacccctttttattct-aaaacaag 815
||||||||| || | |||||||| |||||||||||||| | | ||| ||| || |||||
Sbjct: 8671 ggtcttaccagtcaaggttttgacgaaaatttgcataccacctcttaatctcaagacaag 8612
Query: 816 atgcaaag-ggattccttttgggatgttgtaattcggacaaagttttggcatttttccac 874
||| |||| ||||||||||| ||||||| | | || ||||| ||| || ||| || | ||
Sbjct: 8611 atgtaaagtggattcctttt-ggatgttat-agtcagacaaggttctgccatcttccaac 8554
Query: 875 tggtttacttgcaaaaattaatctttgttggtctggaagggaaaccttttttgt 928
| | |||| ||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct: 8553 t-gcttacctgcaaaaattaatctttgttggtctgg-agggataccttctttgt 8502
Score = 363 bits (183), Expect = e-100
Identities = 216/227 (95%)
Strand = Plus / Minus
Query: 341 ccacctcttaatctcaagacaagatgtaaagtggattccttttggatgttatagtcagac 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8634 ccacctcttaatctcaagacaagatgtaaagtggattccttttggatgttatagtcagac 8575
Query: 401 aaggttctgccatcttccaactgcttacctgcaaaaattaatctttgttggtctggagga 460
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8574 aaggttctgccatcttccaactgcttacctgcaaaaattaatctttgttggtctggaggg 8515
Query: 461 ataccttctttgtcttgaatcttagacttgacgttatcgatggtgtcggaagattcgact 520
||||||||||||||||||||||| || || ||||||||||||||||| |||||||| |||
Sbjct: 8514 ataccttctttgtcttgaatcttcgatttcacgttatcgatggtgtcagaagattcaact 8455
Query: 521 tccaaagtgatggtcttaccagtcaaggttttgacgaaaatttgcat 567
||||||||||| ||||||||||| || || || ||||||||||||||
Sbjct: 8454 tccaaagtgatagtcttaccagttaaagtcttaacgaaaatttgcat 8408
>3x_Contig1803
Length = 52241
Score = 283 bits (143), Expect = 3e-76
Identities = 200/219 (91%)
Strand = Plus / Plus
Query: 341 ccacctcttaatctcaagacaagatgtaaagtggattccttttggatgttatagtcagac 400
|||||||| |||||||| || | || ||||||||||||||||||||||| |||||||||
Sbjct: 1231 ccacctctcaatctcaaaaccaagtgcaaagtggattccttttggatgttgtagtcagac 1290
Query: 401 aaggttctgccatcttccaactgcttacctgcaaaaattaatctttgttggtctggagga 460
|||||||| ||||||||||| |||||||| ||||| || ||||||||||||||||| ||
Sbjct: 1291 aaggttctaccatcttccaattgcttaccagcaaagatcaatctttgttggtctggtggg 1350
Query: 461 ataccttctttgtcttgaatcttagacttgacgttatcgatggtgtcggaagattcgact 520
|||||||| ||||||||||||||||||||||| || || |||||||||||||||||||||
Sbjct: 1351 ataccttccttgtcttgaatcttagacttgacattgtcaatggtgtcggaagattcgact 1410
Query: 521 tccaaagtgatggtcttaccagtcaaggttttgacgaaa 559
||||||||||||||||||||||||||||| |||||||||
Sbjct: 1411 tccaaagtgatggtcttaccagtcaaggtcttgacgaaa 1449
Score = 115 bits (58), Expect = 2e-25
Identities = 172/204 (84%), Gaps = 5/204 (2%)
Strand = Plus / Plus
Query: 566 ataccacctcttaatctcaagaacagatgtaaagtggattcccttttggatgttatagtc 625
||||||||||| |||||||| | || || |||||||||||| ||||||||||| |||||
Sbjct: 1228 ataccacctctcaatctcaaaaccaagtgcaaagtggattcc-ttttggatgttgtagtc 1286
Query: 626 agacaaagttctgccatctttcaactgcttacctgcaaaaat-tatctttgntggtctgg 684
|||||| ||||| ||||||| ||| |||||||| ||||| || ||||||| ||||||||
Sbjct: 1287 agacaaggttctaccatcttccaattgcttaccagcaaagatcaatctttgttggtctgg 1346
Query: 685 aaggataccctncttgtcttgaatc-taaacttgac-gtatccatgtggtcgg-agattc 741
||||||| | ||||||||||||| || ||||||| | || ||| ||||| ||||||
Sbjct: 1347 tgggataccttccttgtcttgaatcttagacttgacattgtcaatggtgtcggaagattc 1406
Query: 742 gacttccaaatggatggtcttacc 765
|||||||||| ||||||||||||
Sbjct: 1407 gacttccaaagtgatggtcttacc 1430
>3x_Contig990
Length = 3707
Score = 252 bits (127), Expect = 1e-66
Identities = 203/227 (89%), Gaps = 1/227 (0%)
Strand = Plus / Minus
Query: 341 ccacctcttaatctcaagacaagatgtaaagtggattccttttggatgttatagtcagac 400
|||||||| ||||||||||| | || ||||||||||||||||||||||| ||||| |||
Sbjct: 3438 ccacctctcaatctcaagaccaagtgcaaagtggattccttttggatgttgtagtcggac 3379
Query: 401 aaggttctgccatcttccaactgcttacctgcaaaaattaatctttgttggtctggagga 460
|| ||||| ||||||||||| |||||||| ||||| || |||||||||||||||||||||
Sbjct: 3378 aaagttctaccatcttccaattgcttaccagcaaagatcaatctttgttggtctggagga 3319
Query: 461 ataccttctttgtcttgaatcttagacttgacgttatcgatggtgtcggaagattcgact 520
|||||||| |||||||| ||||||||||| || || || |||||||||||||||||||||
Sbjct: 3318 ataccttccttgtcttggatcttagacttaacattgtcaatggtgtcggaagattcgact 3259
Query: 521 tccaaagtgatggtcttaccagtcaaggttttgacgaaaatttgcat 567
||||| || ||||||||||| || || ||||||||||||||||||||
Sbjct: 3258 tccaaggtaatggtcttacctgttaa-gttttgacgaaaatttgcat 3213
Score = 109 bits (55), Expect = 1e-23
Identities = 191/229 (83%), Gaps = 6/229 (2%)
Strand = Plus / Minus
Query: 568 accacctcttaatctcaagaacagatgtaaagtggattcccttttggatgttatagtcag 627
||||||||| |||||||||| || || |||||||||||| ||||||||||| ||||| |
Sbjct: 3439 accacctctcaatctcaagaccaagtgcaaagtggattcc-ttttggatgttgtagtcgg 3381
Query: 628 acaaagttctgccatctttcaactgcttacctgcaaaaat-tatctttgntggtctggaa 686
|||||||||| ||||||| ||| |||||||| ||||| || ||||||| |||||||||
Sbjct: 3380 acaaagttctaccatcttccaattgcttaccagcaaagatcaatctttgttggtctggag 3321
Query: 687 ggataccctncttgtcttgaatc-taaacttgac-gtatccatgtggtcgg-agattcga 743
| ||||| | ||||||||| ||| || |||| || | || ||| ||||| ||||||||
Sbjct: 3320 gaataccttccttgtcttggatcttagacttaacattgtcaatggtgtcggaagattcga 3261
Query: 744 cttccaaatggatggtcttaccggtttaagttttgaccaaaatttgcat 792
||||||| ||||||||||| | |||||||||||| |||||||||||
Sbjct: 3260 cttccaaggtaatggtcttacctg-ttaagttttgacgaaaatttgcat 3213
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 22,056
Number of Sequences: 1807
Number of extensions: 22056
Number of successful extensions: 1394
Number of sequences better than 1.0e-20: 3
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)