BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC42ZE02FM1.SCF screened BAC_end
         (976 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1323                                                        1138   0.0  

>3x_Contig1323 
          Length = 7472

 Score = 1138 bits (574), Expect = 0.0
 Identities = 625/637 (98%), Gaps = 4/637 (0%)
 Strand = Plus / Minus

                                                                        
Query: 86   caaatcttcttcagaaagctcttcttcattgttggcatcctttttcttattgttttgttc 145
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5664 caaatcttcttcagaaagctcttcttcattgttggcatcctttttcttattgttttgttc 5605

                                                                        
Query: 146  atctggtacagtaattggcttctcttcggcgcctggagcagcggcttcctttacgatatc 205
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5604 atctggtacagtaattggcttctcttcggcgcctggagcagcggcttcctttacgatatc 5545

                                                                        
Query: 206  gttatctttcgtcatcagtcaatactagaatccaacggtataatgaaattctaaaaatat 265
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5544 gttatctttcgtcatcagtcaatactagaatccaacggtataatgaaattctaaaaatat 5485

                                                                        
Query: 266  tttcaaatacaattaccggtactcaccaatatcagaaccaatcaatttatcgtcttcgat 325
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5484 tttcaaatacaattaccggtactcaccaatatcagaaccaatcaatttatcgtcttcgat 5425

                                                                        
Query: 326  tttccttagcctttacaagtaggattgtttatcaaatgtctcgttatagctactatatgc 385
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5424 tttccttagcctttacaagtaggattgtttatcaaatgtctcgttatagctactatatgc 5365

                                                                        
Query: 386  ttaaatatcaaactgaaccttaaaaccaaagattttgccacccaatagagaaatcattgt 445
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5364 ttaaatatcaaactgaaccttaaaaccaaagattttgccacccaatagagaaatcattgt 5305

                                                                        
Query: 446  gaacggatatgaagttacccgcatatttaatattcaagaatagcatcaattgaagtgatg 505
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5304 gaacggatatgaagttacccgcatatttaatattcaagaatagcatcaattgaagtgatg 5245

                                                                        
Query: 506  acagctaccaacatggcgtcagactatgctcaatagtttcccattgaatcgtctggaaac 565
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5244 acagctaccaacatggcgtcagactatgctcaatagtttcccattgaatcgtctggaaac 5185

                                                                        
Query: 566  aagcagngcttctcatattatttaaaattattctttttgcttta-taccgttattt-agt 623
            | |||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 5184 aggcagtgcttctcatattatttaaaattattctttttgctttagtaccgttatttaagt 5125

                                                                        
Query: 624  tcactttaatagtgatgttgtgtacttacag-aggaaatccccattttttgcatgtctaa 682
            |||||||| |||||||||||||||||||||| |||||||||||||| |  ||||||||||
Sbjct: 5124 tcactttagtagtgatgttgtgtacttacagaaggaaatccccattataggcatgtctaa 5065

                                                 
Query: 683  tccaattcaagatctttttggattacgatgacgtttg 719
            |||||||||||||||| || || ||||||||||||||
Sbjct: 5064 tccaattcaagatcttatt-gaatacgatgacgtttg 5029


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8254
Number of Sequences: 1807
Number of extensions: 8254
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 976
length of database: 10,358,551
effective HSP length: 16
effective length of query: 960
effective length of database: 10,329,639
effective search space: 9916453440
effective search space used: 9916453440
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)