BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZE02RM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1625 1471 0.0
>3x_Contig1625
Length = 13618
Score = 1471 bits (742), Expect = 0.0
Identities = 803/820 (97%), Gaps = 3/820 (0%)
Strand = Plus / Minus
Query: 45 ctttaaacgaaagtgaagtcatttcttctaccgtcgatgggttgcttgttttattagatt 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2657 ctttaaacgaaagtgaagtcatttcttctaccgtcgatgggttgcttgttttattagatt 2598
Query: 105 cgattcgggcgactagcgcatagaacaaagtatactgaccatctctgtgtattttaactg 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2597 cgattcgggcgactagcgcatagaacaaagtatactgaccatctctgtgtattttaactg 2538
Query: 165 gtgatatctatctgaacactccggtctggttttttaagactataaatcaagagacgagca 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2537 gtgatatctatctgaacactccggtctggttttttaagactataaatcaagagacgagca 2478
Query: 225 taaaatagtagaagacaacgtcaagatgtataacaagctttgtcttatttgtatcattga 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2477 taaaatagtagaagacaacgtcaagatgtataacaagctttgtcttatttgtatcattga 2418
Query: 285 gagatgagaaactgttgaaacttttcagtaaagatgtggaaagtcttgtgtgtggtctta 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2417 gagatgagaaactgttgaaacttttcagtaaagatgtggaaagtcttgtgtgtggtctta 2358
Query: 345 tcctgtcagggtaacaataggagtgtttgagactgttttcgtaacgaacagaaagtggtg 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2357 tcctgtcagggtaacaataggagtgtttgagactgttttcgtaacgaacagaaagtggtg 2298
Query: 405 tacggatgtaaactttgaatttgctttgaaaacggcgcgaattactgtattaggaaatgc 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2297 tacggatgtaaactttgaatttgctttgaaaacggcgcgaattactgtattaggaaatgc 2238
Query: 465 atattctcacttttttccaatttcagttcttcctgagggaaggctgcctggacaggggca 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2237 atattctcacttttttccaatttcagttcttcctgagggaaggctgcctggacaggggca 2178
Query: 525 gttccctctgtctggctagctttccagcaaggcctcccattggatccaccctctangatg 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 2177 gttccctctgtctggctagctttccagcaaggcctcccattggatccaccctctaggatg 2118
Query: 585 ctgggagaggattcctaggcagacagtcatacactttcctcagcagcaattccactctga 644
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct: 2117 ctgggagaggattcctaggcagacagtcatacacttccctcagcagcaatcccactctga 2058
Query: 645 accagactctccagctcacgttccacctggccacagtgctccaatggtctgctcatgcgc 704
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 2057 accagactctccagctcacgtcccacctggccacagtgctccaatggtctgctcatgcgc 1998
Query: 705 tggactctggacaggaatggtcctgagccctagctcanagctaggacctgttccaagcag 764
||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||
Sbjct: 1997 tggactctggacaggaatggtcctgagcctaggctcagagctaggacctgttccaggcag 1938
Query: 765 cttggcctgtcttcgacatttctcacaatttaacatttttgggatccacaattacagaga 824
||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||
Sbjct: 1937 cttggcctgtcttcgacatttctcacaatttaacaattttggaatcaacaattacagaga 1878
Query: 825 attaca-gttaatttattgtgtacaggtgccaattaagac 863
|| ||| ||||||| | ||||||||||| |||||||||||
Sbjct: 1877 ataacaagttaatt-agtgtgtacaggt-ccaattaagac 1840
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5936
Number of Sequences: 1807
Number of extensions: 5936
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)