BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZE03RM1.SCF screened BAC_end
(974 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1488 1247 0.0
>3x_Contig1488
Length = 9807
Score = 1247 bits (629), Expect = 0.0
Identities = 711/729 (97%), Gaps = 7/729 (0%)
Strand = Plus / Plus
Query: 48 ttgaaagagaggtgagaactagttacacatcgtttcaccttctcaccgatctt-aaaaag 106
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 5197 ttgaaagagaggtgagaactagttacacatcgtttcaccttctcaccgatcttcaaaaag 5256
Query: 107 acaacaatttcatctatgcttgagttatcaccttttggttctggtgctcctgtcatggga 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5257 acaacaatttcatctatgcttgagttatcaccttttggttctggtgctcctgtcatggga 5316
Query: 167 tgataatctacggatgaagcagaagatattcgagaaggctgtctttccattttaatgctt 226
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 5317 tgataatctacggatgaagcagaagagattcgagaaggctgtctttccattttaatgctt 5376
Query: 227 tctgtatcagaaacattggccgctgctgccgctgcagcagcggctggaactgctaaattt 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5377 tctgtatcagaaacattggccgctgctgccgctgcagcagcggctggaactgctaaattt 5436
Query: 287 ttagacgttggggaattcgatggatctgaagctgtttggttggctaatttcgccatatga 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5437 ttagacgttggggaattcgatggatctgaagctgtttggttggctaatttcgccatatga 5496
Query: 347 tacgctgaaaacctcttcgaggctcttctttgcagattatttccctttttcaattgagtt 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5497 tacgctgaaaacctcttcgaggctcttctttgcagattatttccctttttcaattgagtt 5556
Query: 407 aacgcatcgctttcagaacccttgggaacttctaacgtaggtatctgttttgtttcaata 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5557 aacgcatcgctttcagaacccttgggaacttctaacgtaggtatctgttttgtttcaata 5616
Query: 467 tgagctgaagtagatgtcggtcccgcgccagccaaagatgtcgttgcgctgactacggat 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5617 tgagctgaagtagatgtcggtcccgcgccagccaaagatgtcgttgcgctgactacggat 5676
Query: 527 gatacggaagatctttgaggagtatgctgatatttcaaagcatcttcattcctgctcagt 586
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5677 gaaacggaagatctttgaggagtatgctgatatttcaaagcatcttcattcctgctcagt 5736
Query: 587 tttatcatcgcctgtttaacctttagtttctccaagagtttaactattatatctctgatc 646
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 5737 tttatcatcgcctgtttaaccttaagtttctccaagagtttaactataatatctctgatc 5796
Query: 647 tgcggtaggtattttattcaaacgtttcctcagatgcagtcttctctcaatgccacctcc 706
||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 5797 tgcggtaggta-tttattc-aacgtttcctcagatgcagtc-tctctcaatgccacctcc 5853
Query: 707 aatattctttcgaaaggtcttttgcaccatcgcccagattccgaattatcatttcttgca 766
||||||| |||| ||||||||||| ||||||| ||| |||||| ||||| |||| |||
Sbjct: 5854 aatattc-ttcg-aaggtcttttggcacatcgccaaga-tccgaaatatcaattctagca 5910
Query: 767 tgggtaaaa 775
|||||||||
Sbjct: 5911 tgggtaaaa 5919
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7392
Number of Sequences: 1807
Number of extensions: 7392
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 974
length of database: 10,358,551
effective HSP length: 16
effective length of query: 958
effective length of database: 10,329,639
effective search space: 9895794162
effective search space used: 9895794162
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)