BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZE04FM1.SCF screened BAC_end
(960 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1790 630 e-180
3x_Contig580 565 e-161
>3x_Contig1790
Length = 27369
Score = 630 bits (318), Expect = e-180
Identities = 318/318 (100%)
Strand = Plus / Plus
Query: 85 cttttccttgtaaggacaaagcgaatggcctcattgtttgcaatccaaggttggagaaaa 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27052 cttttccttgtaaggacaaagcgaatggcctcattgtttgcaatccaaggttggagaaaa 27111
Query: 145 cttttagagtgttgttggaggcccaagcacgcaaccaccaggcctgtgaaatactgatca 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27112 cttttagagtgttgttggaggcccaagcacgcaaccaccaggcctgtgaaatactgatca 27171
Query: 205 tttgggcaaacaagaaaatgaaacacaaaaatgatatcatcttccatccaccgaaaaaca 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27172 tttgggcaaacaagaaaatgaaacacaaaaatgatatcatcttccatccaccgaaaaaca 27231
Query: 265 cggcataccacttatagacgtccagggaaacaacaccgtttgattttgtttcttcagcga 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27232 cggcataccacttatagacgtccagggaaacaacaccgtttgattttgtttcttcagcga 27291
Query: 325 ttagcttgccgcttgactttgaacgatctccacaggtggtggactcctcattggcattat 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27292 ttagcttgccgcttgactttgaacgatctccacaggtggtggactcctcattggcattat 27351
Query: 385 ccgattccgctggagcct 402
||||||||||||||||||
Sbjct: 27352 ccgattccgctggagcct 27369
>3x_Contig580
Length = 2708
Score = 565 bits (285), Expect = e-161
Identities = 337/348 (96%), Gaps = 5/348 (1%)
Strand = Plus / Minus
Query: 423 ctgttagtttctgaaatattaactgaggacgccgtacgggacaaaattgatgatttcacc 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2708 ctgttagtttctgaaatattaactgaggacgccgtacgggacaaaattgatgatttcacc 2649
Query: 483 -atggagtcatccccaagggaccccttctgtagcaattctactggttcgccttgttcttt 541
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2648 catggagtcatccccaagggaccccttctgtagcaattctactggttcgccttgttcttt 2589
Query: 542 tactctaccattttccataatgataacccaatctgcattttttaaagttaatgcaacatt 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2588 tactctaccattttccataatgataacccaatctgcattttttaaagttaatgcaacatt 2529
Query: 602 gtgagaaaccaatacacatgttctttncttccattaatgggccctgttatacaattttcg 661
||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||
Sbjct: 2528 gtgagaaaccaatacacatgttc-ttccttccattaatggg-cctgttatacaattttcg 2471
Query: 662 tagatccataaggccgtgtgcgagtctacggcacttaaacaatcatcttacagcaaattg 721
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||
Sbjct: 2470 tagatccataaggccgtgtgcgagtctacggcactcaaacaatcatctaacagcaaa-tg 2412
Query: 722 tc-tgatgaagaatacaatgatcttgccaacgagactttttggttttg 768
|| ||||||||||||||||||||| |||||||||||| |||| |||||
Sbjct: 2411 tcttgatgaagaatacaatgatctggccaacgagactctttgtttttg 2364
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7341
Number of Sequences: 1807
Number of extensions: 7341
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 2
length of query: 960
length of database: 10,358,551
effective HSP length: 16
effective length of query: 944
effective length of database: 10,329,639
effective search space: 9751179216
effective search space used: 9751179216
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)