BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZE04RM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig324 1445 0.0
>3x_Contig324
Length = 1753
Score = 1445 bits (729), Expect = 0.0
Identities = 854/883 (96%), Gaps = 10/883 (1%)
Strand = Plus / Minus
Query: 48 ttcgctagcatttttcc-tgaaattt-aaacttccgagattccggcgacagaatggaatt 105
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1654 ttcgctagcatttttccatgaaatttcaaacttccgagattccggcgacagaatggaatt 1595
Query: 106 tatcagagccgattctatgaacgacggtaaatgtggagatatagtcgagcccgaatcagt 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1594 tatcagagccgattctatgaacgacggtaaatgtggagatatagtcgagcccgaatcagt 1535
Query: 166 agttgcttggaatagatcaatagaagagtttttgtaacgagaaaaaccaagcatctgcaa 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1534 agttgcttggaatagatcaatagaagagtttttgtaacgagaaaaaccaagcatctgcaa 1475
Query: 226 aataatgcaacaggtttcaaggcgggattcataagttttttcaagttgagcaatttgaac 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1474 aataatgcaacaggtttcaaggcgggattcataagttttttcaagttgagcaatttgaac 1415
Query: 286 cacaaaaaagttggtcaacgagatatgaagatttgtgatcaattgaatagagtaaggaag 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1414 cacaaaaaagttggtcaacgagatatgaagatttgtgatcaattgaatagagtaaggaag 1355
Query: 346 ctttttaaacagtgattcttcacgcccgttcactaaggaagccaaccatgtgaaaacgtt 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1354 ctttttaaacagtgattcttcacgcccgttcactaaggaagccaaccatgtgaaaacgtt 1295
Query: 406 aacaatttcaagatcatcaggatgtgcgttaccagaagtgatctgggagtaactatgatc 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1294 aacaatttcaagatcatcaggatgtgcgttaccagaagtgatctgggagtaactatgatc 1235
Query: 466 caattgggaatatttgaaaagagatgataaagattcatatgaaaatccttcgagtaattg 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1234 caattgggaatatttgaaaagagatgataaagattcatatgaaaatccttcgagtaattg 1175
Query: 526 tgatactaccatccattccttgacagttgccaactttaagtgagaaagtattagatcgtc 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1174 tgatactaccatccattccttgacagttgccaactttaagtgagaaagtattagatcgtc 1115
Query: 586 caactggtacatccaattcagaatttcaccatatgaatcggtcttcaatttctgaaagg- 644
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1114 caactggtacatccaattcagaatttcaccatatgaatcggtcttcaatttctgaaagga 1055
Query: 645 agataccatgggatcatcgagtgaattatctagtgcaaacttattcaa-tcctncatagt 703
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 1054 agataccatgggatcatcgagtgaattatctagtgcaaacttattcaattcctccatagt 995
Query: 704 tatagtgttaaaagaattc-aaattttcatggggtttctgttgtgtctgctgact-caac 761
||||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||
Sbjct: 994 tatagtgttaaaagaattcaaaattttcatggtgtttctgttgtgtctgctgactccaac 935
Query: 762 ggntcggt-aagttgtctttgatatgaaga-ttgatcttcttgag-agttcctttaattt 818
|| ||||| ||||||||||||||||||||| |||||||||| || ||||||||||||||
Sbjct: 934 gggtcggtaaagttgtctttgatatgaagatttgatcttctgaagaagttcctttaattt 875
Query: 819 atcatgggtagagtttagatcattacccaagga-ttcttaacttcaaatttttctacgga 877
||||||| |||||| |||||| || |||| || |||| | ||||| |||||||||||||
Sbjct: 874 atcatggtaagagttaagatcaataaccaaagatttctcagcttcagatttttctacgga 815
Query: 878 atcaaacagcgcatttattcttaagtcccattcatttatgatc 920
|||| |||||||| |||| || ||||||||||||| |||||||
Sbjct: 814 atcagacagcgcagttatcctcaagtcccattcatctatgatc 772
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7559
Number of Sequences: 1807
Number of extensions: 7559
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)