BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZE05FM1.SCF screened BAC_end
(953 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1795 1342 0.0
>3x_Contig1795
Length = 38452
Score = 1342 bits (677), Expect = 0.0
Identities = 718/728 (98%), Gaps = 3/728 (0%)
Strand = Plus / Minus
Query: 87 caaggagaaaatgaaaagatgttaagacagcttcgaggaaagatgaataatcacagaatc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33648 caaggagaaaatgaaaagatgttaagacagcttcgaggaaagatgaataatcacagaatc 33589
Query: 147 aattatagttggcctttgttcgtatatgagacctgtcctgtagccatttctacgttaaag 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33588 aattatagttggcctttgttcgtatatgagacctgtcctgtagccatttctacgttaaag 33529
Query: 207 aatttcatacgaccatcctttttgctattgtggcagccatggtggtcgcagttccgcaca 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33528 aatttcatacgaccatcctttttgctattgtggcagccatggtggtcgcagttccgcaca 33469
Query: 267 tgcagtaaccacgatgtaatagaaacgttgccttgtataaatgatgtgcagtaatcagat 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33468 tgcagtaaccacgatgtaatagaaacgttgccttgtataaatgatgtgcagtaatcagat 33409
Query: 327 agagataattagatattatccaccggcctagaatggctttgggggaggtatcttgttagt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33408 agagataattagatattatccaccggcctagaatggctttgggggaggtatcttgttagt 33349
Query: 387 gttttttactaagaacatgcatcagtctcggcatgaatacctgcatgttccaagtttttc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33348 gttttttactaagaacatgcatcagtctcggcatgaatacctgcatgttccaagtttttc 33289
Query: 447 tcagaaattatcgtagcttcgaagatatgaaaaaggaagtcacaccatcgcagacaatca 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33288 tcagaaattatcgtagcttcgaagatatgaaaaaggaagtcacaccatcgcagacaatca 33229
Query: 507 ggatttgtgaatgaattccgagatgctagtggccgaaagccaggcttatagaaaagaatg 566
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 33228 ggatttgtgaatgaattccgagatgctagtggccgaaagccaggcttaaagaaaagaatg 33169
Query: 567 caaatgctcggccttgaggaaaaatcgctacggcaaaactggttgttgtatctggaacct 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33168 caaatgctcggccttgaggaaaaatcgctacggcaaaactggttgttgtatctggaacct 33109
Query: 627 gaagccggtcatcatgttcttcct-cccacccccactgtgtttgttttggcgtttttatc 685
|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 33108 gaagccggtcatcaggttcttcctccccacccccactgtgtttgttttggcgtttttatc 33049
Query: 686 cggtatataagagctgatgtttccagtgtttttttttgcctccaatggcatcccaatcta 745
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 33048 cggtatataagagctgatgtttccagtggttttttttgcctccaatggcatcccaatcta 32989
Query: 746 ttagagttcagctgattaccgtgagagaccggcacattcccttcattcgctgggnaatgg 805
| |||||||||||||| || |||||||||||||||||| |||||||||||| || |||||
Sbjct: 32988 taagagttcagctgataacggtgagagaccggcacatt-ccttcattcgct-ggtaatgg 32931
Query: 806 cattacac 813
||||||||
Sbjct: 32930 cattacac 32923
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5653
Number of Sequences: 1807
Number of extensions: 5653
Number of successful extensions: 27
Number of sequences better than 1.0e-20: 1
length of query: 953
length of database: 10,358,551
effective HSP length: 16
effective length of query: 937
effective length of database: 10,329,639
effective search space: 9678871743
effective search space used: 9678871743
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)