BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZE05RM1.SCF screened BAC_end
(945 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1085 1612 0.0
>3x_Contig1085
Length = 5008
Score = 1612 bits (813), Expect = 0.0
Identities = 885/900 (98%), Gaps = 9/900 (1%)
Strand = Plus / Plus
Query: 48 ttaggagctttataaaaagaa-tgaggtttggaagtgtcttggcgaggaatatatcgtta 106
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 4063 ttaggagctttataaaaagaaatgaggtttggaagtgtcttggcgaggaatatatcgtta 4122
Query: 107 tggaaatacttaaaagtgaccctaggacacctcaacgcatttgataagatgatgttatgg 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4123 tggaaatacttaaaagtgaccctaggacacctcaacgcatttgataagatgatgttatgg 4182
Query: 167 ctgcgagttataacttcagtgggaattatcgtttttgtccttgttttgactgctatttct 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4183 ctgcgagttataacttcagtgggaattatcgtttttgtccttgttttgactgctatttct 4242
Query: 227 gccgcatcaccaaattcgttatatttaggacgattggacacttcaaatgttaacattttg 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4243 gccgcatcaccaaattcgttatatttaggacgattggacacttcaaatgttaacattttg 4302
Query: 287 cagggactatttgataagctcagcagttctgttgtcagtgcaaaactgtctgatattaat 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4303 cagggactatttgataagctcagcagttctgttgtcagtgcaaaactgtctgatattaat 4362
Query: 347 aacggagcaggactcacaacagcagagattcttttactcacgcggtatgtagactcacag 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4363 aacggagcaggactcacaacagcagagattcttttactcacgcggtatgtagactcacag 4422
Query: 407 gtccacgacgtgcccgattatataaagacaggagtttacggatggtgcagcatgaaacat 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4423 gtccacgacgtgcccgattatataaagacaggagtttacggatggtgcagcatgaaacat 4482
Query: 467 gcttctcaagaattatggcagcctgacggtacttggaaggaggaacataactctacaaag 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4483 gcttctcaagaattatggcagcctgacggtacttggaaggaggaacataactctacaaag 4542
Query: 527 gctatgacttgtcacagggaaggagcgcaatacttattgaactatagaaagctattagat 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4543 gctatgacttgtcacagggaaggagcgcaatacttattgaactatagaaagctattagat 4602
Query: 587 gacctangtttgggaatagtgttaagttacgcatacggatatacttacaacgatggtgtt 646
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4603 gacctaggtttgggaatagtgttaagttacgcatacggatatacttacaacgatggtgtt 4662
Query: 647 ttggatcacgacaatgcagaaagtgcaaaatacaacaaatttttggctgctttgtcgaga 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4663 ttggatcacgacaatgcagaaagtgcaaaatacaacaaatttttggctgctttgtcgaga 4722
Query: 707 agaatagtcaacatggtcaatctactttacgtcgtggcagtattggaagttttcatattg 766
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4723 agaaaagtcaacatggtcaatctactttacgtcgtggcagtattggaagttttcatattg 4782
Query: 767 ggatcgattgtcttgtactacatgatcagggaatagacctgnacaaaccatngaaaacca 826
|||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||
Sbjct: 4783 ggatcgattgtcttgtactacatgatca-ggaatagacctgaacaaaccat-gaaaacca 4840
Query: 827 aaatcctcctgcattctatatcactaatgaaactaattggngtttnattttgctc-ttag 885
|||||||||||||||||||||||||||||||||| ||||| |||| ||||||| ||||
Sbjct: 4841 aaatcctcctgcattctatatcactaatgaaact-attggtgttta--tttgctctttag 4897
Query: 886 tagcagtcataaactttactatactatcaatcaacattccgtc-aaagatttcggacgaa 944
|||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||
Sbjct: 4898 tagcagtcataaactttactatactatcaatcaacatt-cgtcaaaagatttcgaacgaa 4956
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5411
Number of Sequences: 1807
Number of extensions: 5411
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 945
length of database: 10,358,551
effective HSP length: 16
effective length of query: 929
effective length of database: 10,329,639
effective search space: 9596234631
effective search space used: 9596234631
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)