BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZE06FM1.SCF screened BAC_end
(952 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1759 1154 0.0
>3x_Contig1759
Length = 25622
Score = 1154 bits (582), Expect = 0.0
Identities = 667/690 (96%), Gaps = 4/690 (0%)
Strand = Plus / Plus
Query: 91 gtctttgaaagctagacccatgtcagccaattgtgtcgaaattagatttaaatcgctggc 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13664 gtctttgaaagctagacccatgtcagccaattgtgtcgaaattagatttaaatcgctggc 13723
Query: 151 aaattgtacaattttcctgtttttaatctcatcagtaacctcagcatctattttcttgac 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13724 aaattgtacaattttcctgtttttaatctcatcagtaacctcagcatctattttcttgac 13783
Query: 211 ttctaataaccgttcatagagagtgttcaagtgacggaagaaaacataaatggttgtgtt 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13784 ttctaataaccgttcatagagagtgttcaagtgacggaagaaaacataaatggttgtgtt 13843
Query: 271 agtgaagagattgaaaatgtgtcgatcggatactatcccactattattggcttcatcaat 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13844 agtgaagagattgaaaatgtgtcgatcggatactatcccactattattggcttcatcaat 13903
Query: 331 aaggcttccgagtaaccaaggtttggctgcctctttggccaagagttcagtctcatcttc 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13904 aaggcttccgagtaaccaaggtttggctgcctctttggccaagagttcagtctcatcttc 13963
Query: 391 ttcattcgattttacggaagatctattttgattctcttcggaattcgaggtttttgcatt 450
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 13964 ttcattcgattttacggaagagctattttgattctcttcggaattcgaggtttttgcatt 14023
Query: 451 cttcgtcctacgcaaaatgtctttcatcagataagagtcttcatcagataatgttctctt 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14024 cttcgtcctacgcaaaatgtctttcatcagataagagtcttcatcagataatgttctctt 14083
Query: 511 attagatttttctgaatcgcttttattagaatcttcttctccattttcttggtcagttat 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14084 attagatttttctgaatcgcttttattagaatcttcttctccattttcttggtcagttat 14143
Query: 571 tgaagagcgttcagattcagcttcatttacatctttgattggatacgaaaagattagaga 630
|||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||
Sbjct: 14144 tgaagagcgttcagatacagcttcattaacatctttgattggatacgaaaagaatagaga 14203
Query: 631 tatgaacgcctttgaaaaatgatccaaatttgatcttatccgaattgg-ataggatgcat 689
|||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 14204 tatgaacgccttgaaaaaatgatcc-aatttgatcttatccgaattggaataggatgcat 14262
Query: 690 ttatcttaacgaacgttaaccccaattccaaaatttcattcaaaatctcccggggcattt 749
| ||||||||||||| ||| |||| |||||||| |||| ||||| || | || |||||
Sbjct: 14263 tagtcttaacgaacgtaaacaccaaatccaaaatatcatacaaaa-cttcacggtcattt 14321
Query: 750 atttcaaaatct-accgactctttggttta 778
|| ||||||||| || ||||||||||||||
Sbjct: 14322 atctcaaaatctaactgactctttggttta 14351
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8959
Number of Sequences: 1807
Number of extensions: 8959
Number of successful extensions: 68
Number of sequences better than 1.0e-20: 1
length of query: 952
length of database: 10,358,551
effective HSP length: 16
effective length of query: 936
effective length of database: 10,329,639
effective search space: 9668542104
effective search space used: 9668542104
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)