BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZE06RM1.SCF screened BAC_end
(939 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1056 1423 0.0
>3x_Contig1056
Length = 3113
Score = 1423 bits (718), Expect = 0.0
Identities = 811/833 (97%), Gaps = 7/833 (0%)
Strand = Plus / Minus
Query: 53 attccgaacttgtgaaaatcggggagtcaaatgctaaaagctcaaagattattaacggga 112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1284 attccgaacttgtgaaaatcggggagtcaaatgctaaaagctcaaagattattaacggga 1225
Query: 113 aagatttcgagaaagattggaggccgctttattttgtatctaaaaggatgggacagaatc 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1224 aagatttcgagaaagattggaggccgctttattttgtatctaaaaggatgggacagaatc 1165
Query: 173 aggccaccttgaacgccgtcaacgcatgtttagatgacatgacttgcccagtttgtatgg 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1164 aggccaccttgaacgccgtcaacgcatgtttagatgacatgacttgcccagtttgtatgg 1105
Query: 233 aacaaatggatattgactcaatgttagttttgaattcctgtggtcattgcttatgcgcac 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1104 aacaaatggatattgactcaatgttagttttgaattcctgtggtcattgcttatgcgcac 1045
Query: 293 aatgttttgaaccgtatgttgataacgcaaaattggagcccaccgcgtccttcggaccga 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1044 aatgttttgaaccgtatgttgataacgcaaaattggagcccaccgcgtccttcggaccga 985
Query: 353 aaggtactaattctgtcaatattccatgtcttgtatgcaggaaaatgaacaatgacaaag 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 984 aaggtactaattctgtcaatattccatgtcttgtatgcaggaaaatgaacaatgacaaag 925
Query: 413 aagcaatcagttatcaactatttgatcaagttaataacctcaactattctattgatgatt 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 924 aagcaatcagttatcaactatttgatcaagttaataacctcaactattctattgatgatt 865
Query: 473 tgaggctagaatatgacaagatggtagctgaacaaaaggctaggttaaaaaatggttaca 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 tgaggctagaatatgacaagatggtagctgaacaaaaggctaggttaaaaaatggttaca 805
Query: 533 caatagattataaaagccttaaagaatctaagaaggttgaaatgtgtcttgacattatca 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 caatagattataaaagccttaaagaatctaagaaggttgaaatgtgtcttgacattatca 745
Query: 593 agatagtcacagattctaacactgatgaaaagctagtcatattttcgcaattcactatgt 652
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 agaaagtcacagattctaacactgatgaaaagctagtcatattttcgcaattcactatgt 685
Query: 653 tctttgaaa-tttangacattttatcaagaagaatctcggtctgaatttcttgaga-atg 710
||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 684 tctttgaaattttaggacattttatcaagaagaatctcggtctgaatttcttgagatatg 625
Query: 711 accggagtatgtcattcagtcaaagatctgcttgtatcgagaagttttaccaggataata 770
|| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 624 acgggagtatgtcatccagtcaaagatctgcttgtatcgagagtttttaccaggataata 565
Query: 771 tttattga-tgatgctaatttctatgaaagcaagt-attcggggcttact-ttacat-tg 826
|||| || ||||||||||||||||||||||| || |||||||||||||| | |||| ||
Sbjct: 564 attatagagtgatgctaatttctatgaaagcaggtaattcggggcttactctcacatgtg 505
Query: 827 gcaaccatgtcatcctacca-atccgttttggaatccctttgttgaaaaacaa 878
||||||||||||||| || |||||||||||||||| ||||||||| |||||
Sbjct: 504 caaaccatgtcatcctagcagatccgttttggaatccgtttgttgaagaacaa 452
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6957
Number of Sequences: 1807
Number of extensions: 6957
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)