BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZE07RM1.SCF screened BAC_end
(948 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1617 1162 0.0
>3x_Contig1617
Length = 15119
Score = 1162 bits (586), Expect = 0.0
Identities = 673/697 (96%), Gaps = 4/697 (0%)
Strand = Plus / Plus
Query: 43 cttgaggtctagatctgctagagtcacttggttttatgataggaatttccttagttttaa 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28 cttgaggtctagatctgctagagtcacttggttttatgataggaatttccttagttttaa 87
Query: 103 ttgattcaaattttgatctgacctcttcaatctcttcttcagcttcttcttcttcgttag 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88 ttgattcaaattttgatctgacctcttcaatctcttcttcagcttcttcttcttcgttag 147
Query: 163 aatctgagaactcttctctttgggtcttgttctctaaattagatggtttcttttgttcct 222
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 148 aatctgagaactcttctctttgggtcttgttctctaaattagatggtttcttttgtccct 207
Query: 223 tcttttcagcccaaagttgagctggtgacttttcattcttgaaacccttgatcaccttat 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 tcttttcagcccaaagttgagctggtgacttttcattcttgaaacccttgatcaccttat 267
Query: 283 cgtcgctatcgtttcctgatgattgagctgaggaagaactctttggtcccaagactttgt 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 cgtcgctatcgtttcctgatgattgagctgaggaagaactctttggtcccaagactttgt 327
Query: 343 tgtattctgcatccctctttagcttggattcttggctttaatttagcaatctcagattga 402
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 328 tgtattctgcatccctctttagcttggattctt-gctttaatttagcaatctcagattga 386
Query: 403 ggatcaatctttttgtcgtaattaggccccgaaacaactagacggngatcttctttactg 462
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 387 ggatcaatctttttgtcgtaattaggccccgaaacaactagacggggatcttctttactg 446
Query: 463 ttttcttcagcaatcactttttgtagatcacccttacaaattggttt-caggaagaagat 521
|||||||||||||||||||||||||||||| | |||| ||||||||| |||||||||||
Sbjct: 447 ttttcttcagcaatcactttttgtagatcaactttaccaattggtttccaggaagaagaa 506
Query: 522 tttggttctagtggtttcttgtcgaaatcacgttcttccaactctggttcaccccattca 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 tttggttctagtggtttcttgtcgaaatcacgttcttccaactctggttcaccccattca 566
Query: 582 tcgtcccttctacctctgctcttctcagtcttttgggggagaaaccgatcctccttgatt 641
|||||| | |||||||||||||||||||| |||||||||||||| ||| || ||||||
Sbjct: 567 tcgtccttcttacctctgctcttctcagtc-tttgggggagaaacggat-cttcttgatg 624
Query: 642 ggaacgatggtgtaggttccttttgctcaaattgtctggatgaaccactgactgtttcct 701
||||||||||||||||||||||||||||| |||||||||||||| ||||||||| || ||
Sbjct: 625 ggaacgatggtgtaggttccttttgctcagattgtctggatgaaacactgactggtttct 684
Query: 702 tggctgccttggcaccaaaggaatttggcttcttgga 738
|||||| ||||||| || ||||| |||||||||||||
Sbjct: 685 tggctgtcttggcagcagaggaaattggcttcttgga 721
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8420
Number of Sequences: 1807
Number of extensions: 8420
Number of successful extensions: 176
Number of sequences better than 1.0e-20: 1
length of query: 948
length of database: 10,358,551
effective HSP length: 16
effective length of query: 932
effective length of database: 10,329,639
effective search space: 9627223548
effective search space used: 9627223548
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)