BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZE08RM1.SCF screened BAC_end
(942 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig910 652 0.0
3x_Contig1039 159 1e-38
>3x_Contig910
Length = 3140
Score = 652 bits (329), Expect = 0.0
Identities = 404/421 (95%), Gaps = 6/421 (1%)
Strand = Plus / Minus
Query: 270 aatggcaaggattcacgcaacttgtgtggaccagcagatggtcttggtgcgtaacaaccg 329
|||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 3140 aatggcaaggat-cacgcaacttgtgtggttt-gcagatggtcttggtgcgtaacaaccg 3083
Query: 330 gacaacttgtccaacatccaatgatgtggagctgctaatctctttagatggcttctttct 389
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 3082 gacaacttgtccaacatccaatgatgtggagctgctaatctctttagatg-cttctttct 3024
Query: 390 gttattaaaatttttttgtagtgacaaaaaatacaatgttagtaaatcgttgcttcatag 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3023 gttattaaaatttttttgtagtgacaaaaaatacaatgttagtaaatcgttgcttcatag 2964
Query: 450 gtgtgcagcatgggaaaagcttattgcaattcagatatggattcgcgttcatgaaagtta 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 2963 gtgtgcagcatgggaaaagcttattgcaattcagatatggattcgcgttcatgaaggtta 2904
Query: 510 tgatgatgttatcttaatcacttt-atattcgttactgtaagtctgctatctaacatcaa 568
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 2903 tgatgatgttatcttaatcactttaatattcgttactgtaagtctgctatctaacatcaa 2844
Query: 569 ttccagaattcaatctcccataaacatactagaaattgacacgttagtccagtttcacaa 628
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 2843 ttccagaattcaatctcccataaacatactagaaattgacacgttagtccagttcaacaa 2784
Query: 629 actggctcttataattcgttcaacttcaagtagtaaatctggttcttattgggatggcat 688
|||| |||||||||| |||||||||||| ||||| ||||| ||||||||| ||||| |||
Sbjct: 2783 actgcctcttataatccgttcaacttcaggtagt-aatct-gttcttatttggatgtcat 2726
Query: 689 g 689
|
Sbjct: 2725 g 2725
>3x_Contig1039
Length = 4866
Score = 159 bits (80), Expect = 1e-38
Identities = 94/96 (97%), Gaps = 2/96 (2%)
Strand = Plus / Minus
Query: 45 gcttcttcatcagtgatacggtggacagcgaatctacccttaacatcgtagacc-aatct 103
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 95 gcttcttcatcagtgatacggtggacagcgaatctaccct-aacatcgtagacccaatct 37
Query: 104 gaagttttcgttggtagcttccaaggtgataacatc 139
||||||||||||||||||||||||||||||||||||
Sbjct: 36 gaagttttcgttggtagcttccaaggtgataacatc 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7841
Number of Sequences: 1807
Number of extensions: 7841
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 2
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)