BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZE09FM1.SCF screened BAC_end
(963 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1340 1059 0.0
>3x_Contig1340
Length = 7156
Score = 1059 bits (534), Expect = 0.0
Identities = 657/690 (95%), Gaps = 8/690 (1%)
Strand = Plus / Plus
Query: 87 tactggatccactaatcctaccataggtaggaacaccgtttgtctggaagaagtcttgat 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4057 tactggatccactaatcctaccataggtaggaacaccgtttgtctggaagaagtcttgat 4116
Query: 147 tacagcagctttacccttagcggcattatctaaattgacattaccgccttgagtgtcaat 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4117 tacagcagctttacccttagcggcattatctaaattgacattaccgccttgagtgtcaat 4176
Query: 207 ctcgttggaatcctgtaattcatccatatccataatttcaacaacattcgccactaaata 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4177 ctcgttggaatcctgtaattcatccatatccataatttcaacaacattcgccactaaata 4236
Query: 267 cggtaattgtttgttattcttgatcttttcttgattatccttaatcttctctagcatctg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4237 cggtaattgtttgttattcttgatcttttcttgattatccttaatcttctctagcatctg 4296
Query: 327 actgttttcatgatacaaacgttgtagttcggatctgaatatcctaatttcgttatctag 386
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4297 actgttttcatgagacaaacgttgtagttcggatctgaatatcctaatttcgttatctag 4356
Query: 387 caacttcgcacgattagttagttcggaagctgatagattgaaaaattcttgatcgatatc 446
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4357 caacttcgcacgagtagttagttcggaagctgatagattgaaaaattcttgatcgatatc 4416
Query: 447 atcatcatctggctgactttggttattcaattcttctaacgtagacatcacttattcgag 506
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 4417 atcatcatctggctgactttggttattcaattcttctaacgtagacatcacttattcgtg 4476
Query: 507 tttatatgtatgtctattntctttgccaatctcaaatcatggttnctcaatataatacct 566
|||||||||||||||||| ||||||||||||||||| ||| || |||||||||||||||
Sbjct: 4477 tttatatgtatgtctattttctttgccaatctcaaacaatgtttcctcaatataatacct 4536
Query: 567 ataaaaacgttgtgctttttcagctcgcttctctttacaagggttttggtacaaatggca 626
||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||
Sbjct: 4537 ataaaaacgttgtgcttttccagctcgcttctctttacaagggttttggtaccaattgca 4596
Query: 627 cagtcttagttt--attacagacagatggacctaccg-gttcttctcacttttaaatcgn 683
|||||| ||| | || |||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 4597 cagtct-agtattaatcacagacagatggac-taccgtgttcttctcacttttaaatcgt 4654
Query: 684 cttttgccaccgaaaccgggtttttcagaccatattcattggttaaatggaattgggtaa 743
||||||||||| |||| ||| ||||||| ||||| ||||| |||||| ||||| | |||
Sbjct: 4655 cttttgccaccagaacctggtatttcagaacatatacattgattaaat-gaatttgttaa 4713
Query: 744 gcttttaaaaatccccattggaaaaaaggg 773
|| |||||| || ||||||| |||||||||
Sbjct: 4714 gc-tttaaagat-cccattgaaaaaaaggg 4741
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,857
Number of Sequences: 1807
Number of extensions: 10857
Number of successful extensions: 608
Number of sequences better than 1.0e-20: 1
length of query: 963
length of database: 10,358,551
effective HSP length: 16
effective length of query: 947
effective length of database: 10,329,639
effective search space: 9782168133
effective search space used: 9782168133
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)