BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZE09RM1.SCF screened BAC_end
(944 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1686 1342 0.0
>3x_Contig1686
Length = 15382
Score = 1342 bits (677), Expect = 0.0
Identities = 807/844 (95%), Gaps = 5/844 (0%)
Strand = Plus / Minus
Query: 42 cttcgaccaa-gtaaccttaattttcttggagatttcagggatccatttagacaaatctt 100
|||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 13544 cttcgaccaaagtaaccttaatttccttggagatttcagggatccatttagacaaatctt 13485
Query: 101 ggtcaacgtaatcttgcaattcagcagcaaattcaacaccggttggaccaccaccaacaa 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13484 ggtcaacgtaatcttgcaattcagcagcaaattcaacaccggttggaccaccaccaacaa 13425
Query: 161 caacgaaactcaacaatctcttgcgttcagggtcgttagcagacaaagtagcagtctttt 220
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 13424 caacgaaactcaacaatctcttgcgttcagggtcgttagcagacaaagtagcagcctttt 13365
Query: 221 caatgttattcatgattttagttctaatatcttgagcgtccggaatttccttcaagaagg 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13364 caatgttattcatgattttagttctaatatcttgagcgtccggaatttccttcaagaagg 13305
Query: 281 aggcgttttcgaagacacctgggataccgaaggtagttggttgagcaccaacaccgacga 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13304 aggcgttttcgaagacacctgggataccgaaggtagttggttgagcaccaacaccgacga 13245
Query: 341 ccaaataatcatagttcaaatcaagttcgtagtcatggtnctttagtagcagattttatt 400
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 13244 ccaaataatcatagttcaaatcaagttcgtagtcatggt-ctttagtagcagattttatt 13186
Query: 401 ctaacggtcttggcaacaggatcgatgtccttggcttcagcctcatagtaatgaacttca 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13185 ctaacggtcttggcaacaggatcgatgtccttggcttcagcctcatagtaatgaacttca 13126
Query: 461 ccaggtgaagatctggtgatggatctgacaggttcgacaatggacttcaactcaacggtg 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13125 ccaggtgaagatctggtgatggatctgacaggttcgacaatggacttcaactcaacggtg 13066
Query: 521 ccgactggagtagaaggtagcaatggagtgaacaagaagtagtttcttggagaaacaaca 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13065 ccgactggagtagaaggtagcaatggagtgaacaagaagtagtttcttggagaaacaaca 13006
Query: 581 ataacgttatacaaagaagtatccaaatgtttcaatatggacacagaatccccaccagta 640
||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||
Sbjct: 13005 ataacgttatacaaagaagtatccaaatgtttcaataaggacacagaaccccaaccagta 12946
Query: 641 cccata-cgatcaagtttttccttggagtatcgttagcgaaagtggcagcttgaggaatt 699
|||| | ||| | | |||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 12945 cccaaaacgacaagggttttccttggagaaccgttagcgaaagtggcagcttgaggaatt 12886
Query: 700 tgaagaagtggattagcttncctgttccattcataggatacgttaccagttacaggcaac 759
||| || |||||||||||| ||||| | |||||||||| |||| |||||| ||| ||||
Sbjct: 12885 tgaggaggtggattagcttccctgtacaattcataggaaacgtaaccagtaccagccaac 12826
Query: 760 aaaagcgctagagaaactttcaaagtgtgagaaaccactcttcttgctatcgatggcttt 819
||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 12825 aaagccgctagagaaactttcaaagtggtagaaaccactcttcttgctagcgatggcttt 12766
Query: 820 actgggacaacagctttttgggccatttttagaaattggatttgggactagaaaaaaatt 879
||||||||||||||||||| ||||| | ||||||||| ||||| | |||||||||||||
Sbjct: 12765 actgggacaacagcttttt-ggccaatattagaaatt-gattttgtactagaaaaaaatc 12708
Query: 880 tagc 883
||||
Sbjct: 12707 tagc 12704
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7188
Number of Sequences: 1807
Number of extensions: 7188
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)