BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC42ZE10FM1.SCF screened BAC_end
         (937 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1800                                                         850   0.0  

>3x_Contig1800 
          Length = 38778

 Score =  850 bits (429), Expect = 0.0
 Identities = 480/493 (97%), Gaps = 3/493 (0%)
 Strand = Plus / Plus

                                                                         
Query: 87    gagcccacacacgtaaccagaatgaaccgcagttaatctgtacttaagagtgtgctggtt 146
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35814 gagcccacacacgtaaccagaatgaaccgcagttaatctgtacttaagagtgtgctggtt 35873

                                                                         
Query: 147   tttgttaagaagtctgtagaatatagcccagccaatgttttaagactgcagtaagatagg 206
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35874 tttgttaagaagtctgtagaatatagcccagccaatgttttaagactgcagtaagatagg 35933

                                                                         
Query: 207   catcctttagcttttcttctctcatcttttcgtcgtcctgtgactcttctgcaataattt 266
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35934 catcctttagcttttcttctctcatcttttcgtcgtcctgtgactcttctgcaataattt 35993

                                                                         
Query: 267   tgacaggctcatggataccacgttaagtactgtgttcctgcacttctaaatcctgaaggg 326
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35994 tgacaggctcatggataccacgttaagtactgtgttcctgcacttctaaatcctgaaggg 36053

                                                                         
Query: 327   tcactggtgaagcatttcgaacaacactaattgcgagtgttatacttcttgaacacttct 386
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36054 tcactggtgaagcatttcgaacaacactaattgcgagtgttatacttcttgaacacttct 36113

                                                                         
Query: 387   ctaattagtcttgtactgagaagttaggggcctcttcgaatatcgatgagtctgcgttaa 446
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36114 ctaattagtcttgtactgagaagttaggggcctcttcgaatatcgatgagtctgcgttaa 36173

                                                                         
Query: 447   acaacttggcatggtaatactttcactttgggataaaacaagcgccacgacatatattgc 506
             |||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||
Sbjct: 36174 acaacttggcatggtaatactttcactttgtgataaaacaagcgcaacgacatagattgc 36233

                                                                         
Query: 507   gat-ttattttaagaaccagc-acaggaactggagacatcggatttatttcctatttttc 564
             ||| | ||| ||||||||||| ||| |||||| |||||||| | |||| ||||| |||||
Sbjct: 36234 gatataattataagaaccagcaacaagaactgtagacatcgta-ttatatcctaattttc 36292

                          
Query: 565   taaagctttctat 577
             |||||||||||||
Sbjct: 36293 taaagctttctat 36305


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7042
Number of Sequences: 1807
Number of extensions: 7042
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)