BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC42ZE10FM1.SCF screened BAC_end (937 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1800 850 0.0 >3x_Contig1800 Length = 38778 Score = 850 bits (429), Expect = 0.0 Identities = 480/493 (97%), Gaps = 3/493 (0%) Strand = Plus / Plus Query: 87 gagcccacacacgtaaccagaatgaaccgcagttaatctgtacttaagagtgtgctggtt 146 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 35814 gagcccacacacgtaaccagaatgaaccgcagttaatctgtacttaagagtgtgctggtt 35873 Query: 147 tttgttaagaagtctgtagaatatagcccagccaatgttttaagactgcagtaagatagg 206 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 35874 tttgttaagaagtctgtagaatatagcccagccaatgttttaagactgcagtaagatagg 35933 Query: 207 catcctttagcttttcttctctcatcttttcgtcgtcctgtgactcttctgcaataattt 266 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 35934 catcctttagcttttcttctctcatcttttcgtcgtcctgtgactcttctgcaataattt 35993 Query: 267 tgacaggctcatggataccacgttaagtactgtgttcctgcacttctaaatcctgaaggg 326 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 35994 tgacaggctcatggataccacgttaagtactgtgttcctgcacttctaaatcctgaaggg 36053 Query: 327 tcactggtgaagcatttcgaacaacactaattgcgagtgttatacttcttgaacacttct 386 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 36054 tcactggtgaagcatttcgaacaacactaattgcgagtgttatacttcttgaacacttct 36113 Query: 387 ctaattagtcttgtactgagaagttaggggcctcttcgaatatcgatgagtctgcgttaa 446 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 36114 ctaattagtcttgtactgagaagttaggggcctcttcgaatatcgatgagtctgcgttaa 36173 Query: 447 acaacttggcatggtaatactttcactttgggataaaacaagcgccacgacatatattgc 506 |||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||| Sbjct: 36174 acaacttggcatggtaatactttcactttgtgataaaacaagcgcaacgacatagattgc 36233 Query: 507 gat-ttattttaagaaccagc-acaggaactggagacatcggatttatttcctatttttc 564 ||| | ||| ||||||||||| ||| |||||| |||||||| | |||| ||||| ||||| Sbjct: 36234 gatataattataagaaccagcaacaagaactgtagacatcgta-ttatatcctaattttc 36292 Query: 565 taaagctttctat 577 ||||||||||||| Sbjct: 36293 taaagctttctat 36305 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7042 Number of Sequences: 1807 Number of extensions: 7042 Number of successful extensions: 52 Number of sequences better than 1.0e-20: 1 length of query: 937 length of database: 10,358,551 effective HSP length: 16 effective length of query: 921 effective length of database: 10,329,639 effective search space: 9513597519 effective search space used: 9513597519 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)