BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZE10RM1.SCF screened BAC_end
(919 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig375 1148 0.0
>3x_Contig375
Length = 1974
Score = 1148 bits (579), Expect = 0.0
Identities = 684/706 (96%), Gaps = 10/706 (1%)
Strand = Plus / Minus
Query: 42 cttcctgtcaaccaacttgtgctataaaatgcctgggattgtagtcaacaaagaacaaag 101
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1146 cttcctgtcaaccaacttgtgctaaaaaatgcctgggattgtagtcaacaaagaacaaag 1087
Query: 102 gaggactggcaagagtggattagacggctatcaatttctttactcaaagaatcatcttct 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1086 gaggactggcaagagtggattagacggctatcaatttctttactcaaagaatcatcttct 1027
Query: 162 catgctttacgtgcctgctccggattggctggtatctactatccattagctagagaatta 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1026 catgctttacgtgcctgctccggattggctggtatctactatccattagctagagaatta 967
Query: 222 ttcaacgcctcatttgcaagttgttggggtgaactttacacgcaatatcaagaggatttg 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 966 ttcaacgcctcatttgcaagttgttggggtgaactttacacgcaatatcaagaggatttg 907
Query: 282 gttcagtctttgtgctctgctttatcctcaccaaacaatcctcctgaaatccaccagaca 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 906 gttcagtctttgtgctctgctttatcctcaccaaacaatcctcctgaaatccaccagaca 847
Query: 342 ttattaaatttggttgaattcatggagcatgacgacaaaccgctaccaatttctatatca 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 ttattaaatttggttgaattcatggagcatgacgacaaaccgctaccaatttctatatca 787
Query: 402 actcttggcgaatacgctcagcgttgtcatgcatatgcaaaagctntacattataaagaa 461
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 786 actcttggcgaatacgctcagcgttgtcatgcatatgcaaaagctttacattataaagaa 727
Query: 462 ctggagttcattgaagaagccaac-acttc-actatcgagtccttaatcagtatcaataa 519
|||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 726 ctggagttcattgaag-agccaacaacttcaactatcgagtccttaatcagtatcaataa 668
Query: 520 tcaattacaccaaacagatgcagcattcggtatttttgagcatgcgcagcaacaccacga 579
||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct: 667 tcaattacaccaaacagatgcagcaatcggtattttgaagcatgcgcagcaacaccacga 608
Query: 580 tctacaattgaa-gaaacttggt-cgaaaagtttcaaagatgggatgacgctttgactgc 637
|||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct: 607 tctacaattgaaggaaacttggtacgaaaagttacaaagatgggatgacgctttgactgc 548
Query: 638 gtat-ataagcgtgaagctgctggtgagaattc-attg-agttacaattgg-aaaatgag 693
|||| |||||||||| ||||||||||| |||| || | |||||||||||| ||||||||
Sbjct: 547 gtataataagcgtgaggctgctggtgaagattcgatagaagttacaattggtaaaatgag 488
Query: 694 atcatt-cacgcctttagtgactgggatcaattgtctgaacttgca 738
|||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 487 atcattacacgccttaggtgactgggatcaattgtctgaacttgca 442
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6468
Number of Sequences: 1807
Number of extensions: 6468
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)