BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC42ZE11FM1.SCF screened BAC_end (941 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig640 1261 0.0 >3x_Contig640 Length = 3164 Score = 1261 bits (636), Expect = 0.0 Identities = 718/742 (96%), Gaps = 3/742 (0%) Strand = Plus / Minus Query: 89 acaacaacacctctaccagaagtatccacagagtctaaaagaccagtcaaatcttccatg 148 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1121 acaacaacacctctaccagaagtatccacagagtctaaaagaccagtcaaatcttccatg 1062 Query: 149 acgtcatccatcatttcttcttcatcatcgtctggacctacaactaataatcgggaacca 208 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1061 acgtcatccatcatttcttcttcatcatcgtctggacctacaactaataatcgggaacca 1002 Query: 209 gaaacagccttttccaaatcatttgcagcaatttttacacctagagcagccttgacttct 268 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1001 gaaacagccttttccaaatcatttgcagcaatttttacacctagagcagccttgacttct 942 Query: 269 ttgtgatgttgatattcagacttcaaacgtaactcacgtaagggttgaggtgtcaacaag 328 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 941 ttgtgatgttgatattcagacttcaaacgtaactcacgtaagggttgaggtgtcaacaag 882 Query: 329 gctctgatattcgtcacaatcggaccgttcataccacataaaacgattctgtcaccctct 388 ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct: 881 gctctgatattcgtcacaatcggaccgttcataccacataaaaagattctgtaaccctct 822 Query: 389 cttaagtaaccattagatagaataacatcgatagtggtaccgaaaccttcaacaaccttc 448 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 821 cttaagtaaccattagatagaataacatcgatagtggtaccgaaaccttcaacaaccttc 762 Query: 449 acttcaagaattgtagcttcaacgtgagacaaatatttcaattgcttagacattctcttt 508 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 761 acttcaagaattgtagcttcaacgtgagacaaatatttcaattgcttagacattctcttt 702 Query: 509 tgagtcaattctaatagcaaccacaacaaatcatgaacaccttcacctgtaacggcagat 568 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 701 tgagtcaattctaatagcaaccacaacaaatcaggaacaccttcacctgtaacggcagat 642 Query: 569 gttggaacaatagagacgtatttggctaggttggtgttttggaaatacaattctgagttc 628 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 641 gttggaacaatagagacgtatttggctaggttgttgttttggaaatacaattctgagttc 582 Query: 629 aaaccttgntcagcaagagcgactttgatgttggcaagtctagtttggaactcttgctta 688 |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 581 aaaccttgttcagcaagagcgactttgatgttgtcaagtctagtttggaactcttgctta 522 Query: 689 actgctcgntcttgtttgtcaaaagagtctctggaagaattgttttgtggttattaccca 748 |||||||| |||||||||||||| ||||||||| |||| |||||| || || |||||||| Sbjct: 521 actgctcgttcttgtttgtcaaaggagtctctgaaagagttgtttggt-gtaattaccca 463 Query: 749 gtcgtacaattctattgatctttttaaagccaacgatgaaaagagcccttcctgtccttc 808 ||||||||| ||||| |||||| || ||| ||||||||||| ||| |||| ||||| || Sbjct: 462 gtcgtacaa-tctatcgatcttattcaaggcaacgatgaaaggag-cctttctgtctctc 405 Query: 809 aataatccgatggattcaatgg 830 ||||||| |||||||||||||| Sbjct: 404 aataatctgatggattcaatgg 383 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6781 Number of Sequences: 1807 Number of extensions: 6781 Number of successful extensions: 48 Number of sequences better than 1.0e-20: 1 length of query: 941 length of database: 10,358,551 effective HSP length: 16 effective length of query: 925 effective length of database: 10,329,639 effective search space: 9554916075 effective search space used: 9554916075 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)