BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZE11RM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1522 1455 0.0
>3x_Contig1522
Length = 7810
Score = 1455 bits (734), Expect = 0.0
Identities = 823/850 (96%), Gaps = 3/850 (0%)
Strand = Plus / Plus
Query: 48 agcggttttcattgcaccttgtt-acatagttggcatttcaagtgcattagacaacttgt 106
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 6394 agcggttttcattgcaccttgttcacatagttggcatttcaagtgcattagacaacttgt 6453
Query: 107 atcaaaaacatatcctcaatttgtttgtcctaactgcagagcagtttgtgatttataggc 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 6454 atcaaaaacatatcctcaatttgtttgtcctaactgcagagcagtttgtgatttagaggc 6513
Query: 167 cgacttggatagtgacgatgaagatgaagatgaggaatttgtagattattatgtttattc 226
|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 6514 cgacttggatagtgacgatgaagatgaagatgaggaatttgtagatgaagatgtttattc 6573
Query: 227 accgaacgagactcttgataccaggtcgagactatccccaatcaatgatgagggcacatc 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6574 accgaacgagactcttgataccaggtcgagactatccccaatcaatgatgagggcacatc 6633
Query: 287 tttctttccgagtatgaacagagatagcagaataacacatccaccaataccagaacagga 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6634 tttctttccgagtatgaacagagatagcagaataacacatccaccaataccagaacagga 6693
Query: 347 agacgaatactgtaacgacgtcgatggcgatattcgcatgctcaactgaacaggccagtt 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6694 agacgaatactgtaacgacgtcgatggcgatattcgcatgctcaactgaacaggccagtt 6753
Query: 407 tcagatgttctgaaagttattaatcttaaagcacatatatatcatagtcatatatatata 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6754 tcagatgttctgaaagttattaatcttaaagcacatatatatcatagtcatatatatata 6813
Query: 467 tatatattcaattctttcagtattttccgtatttttttttcttacaacgtagtcctcgtc 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6814 tatatattcaattctttcagtattttccgtatttttttttcttacaacgtagtcctcgtc 6873
Query: 527 ggtgattgtgatggtataaatgtacctaaagcggtttgtaatgggaagtaaaactggtat 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6874 ggtgattgtgatggtataaatgtacctaaagcggtttgtaatgggaagtaaaactggtat 6933
Query: 587 gttagaaaagaggagtacattacttaagatgttacatatgtttctcatttagtatctggc 646
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 6934 gttagaaaagaggagtacattacttaagatgttacatatgtttctcatttagtatctgtc 6993
Query: 647 tttctcaccaatcaatctcanaaggacgtnctgtgcttgctgcttttcaagcccatactt 706
|||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||
Sbjct: 6994 tttctcaccaatcaatctcaaaaggacgtcctgtgcttgctgctttccaagcccatactt 7053
Query: 707 gtagatttggtgccctncatcgacga-tttncatttctgtgtcttggatgaaattttgaa 765
|||||||||||||||| ||||||||| ||| |||| |||||||||||||||||||||| |
Sbjct: 7054 gtagatttggtgccctccatcgacgattttccattcctgtgtcttggatgaaattttgga 7113
Query: 766 c-acttcctttgccagtttccccattgaggagacttttttattacctctttacggcttac 824
| ||| |||||||||||||||||||||||||||||||||||||| ||| |||| ||||||
Sbjct: 7114 caactccctttgccagtttccccattgaggagacttttttattagctcattactgcttac 7173
Query: 825 aacactcattttaatttctcttaggttttcttagccgttcaagaattctttttaactcat 884
|||||||||||| |||||||||||||||||| ||| |||||||| ||||| |||||||
Sbjct: 7174 aacactcatttttatttctcttaggttttctaagctgttcaagacatctttataactcaa 7233
Query: 885 tagggagctc 894
|| |||||||
Sbjct: 7234 taaggagctc 7243
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,000
Number of Sequences: 1807
Number of extensions: 13000
Number of successful extensions: 1654
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)