BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZE12FM1.SCF screened BAC_end
(941 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1297 1176 0.0
>3x_Contig1297
Length = 4767
Score = 1176 bits (593), Expect = 0.0
Identities = 686/708 (96%), Gaps = 8/708 (1%)
Strand = Plus / Minus
Query: 87 tcttcattccttgggtctacctgtttctgaaaggcaactatcacaaagcgtacagtctga 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3163 tcttcattccttgggtctacctgtttctgaaaggcaactatcacaaagcgtacagtctga 3104
Query: 147 acctgttattaacggactaaatttcggtatgcttgggaagggaagttctaaaatgttaat 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3103 acctgttattaacggactaaatttcggtatgcttgggaagggaagttctaaaatgttaat 3044
Query: 207 atccaaacagagtacggctgaatttttgcaaaggagaaacctagataaattagtgttttg 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3043 atccaaacagagtacggctgaatttttgcaaaggagaaacctagataaattagtgttttg 2984
Query: 267 gaacaaacgatacactcaaaaaagtcacaaatataacggtgagtataccgtgctacaaac 326
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2983 gaacaaacgagacactcaaaaaagtcacaaatataacggtgagtataccgtgctacaaac 2924
Query: 327 tgtgctaaattctgtggtcggcagtgtctatctattgcacggtcaagacaaggccaccga 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2923 tgtgctaaattctgtggtcggcagtgtctatctattgcacggtcaagacaaggccaccga 2864
Query: 387 atacgtgttgcatgaactattcagcgacaatagtgattccctaacgaagatatctgaaag 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2863 atacgtgttgcatgaactattcagcgacaatagtgattccctaacgaagatatctgaaag 2804
Query: 447 tttgttagcaaacagggatacgaccgagaagttataatattatgtctaattttacacgac 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2803 tttgttagcaaacagggatacgaccgagaagttataatattatgtctaattttacacgac 2744
Query: 507 aggaaagatagagatatggaatacacaatagacttcgacatcaataaaaagcactcgagt 566
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2743 aggaaagaaagagaaatggaatacacaatagacttcgacatcaataaaaagcactcgagt 2684
Query: 567 gaatggtctccatccgagttgggaaagagctttcaaaacttgtatatatatatttcgaaa 626
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2683 gaatggtctccatcggagttgggaaagagctttcaaaacttgtatatatatatttcgaaa 2624
Query: 627 cggaagttttcatcacagctcttggtcaatgtgggtgttttaatctactctttcatccct 686
||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 2623 cggaagtttcaatcacagctcttggtcaatgt-ggtgttttaatctactctttcatccct 2565
Query: 687 gctcaatttcaacg-tttatttttatgaattta-caaaagcatg-aaagcttatac-ttt 742
|||||||||||||| |||||| | ||||||||| |||||||||| ||||| || | |||
Sbjct: 2564 gctcaatttcaacgttttattataatgaatttaccaaaagcatgaaaagcataacctttt 2505
Query: 743 aacgacactccatcgt--aacttc-atttaaaatgaccctcgaaagaa 787
|||||||||||||||| ||||| ||| ||||||| |||||||||||
Sbjct: 2504 aacgacactccatcgtcacacttcaattaaaaatgaacctcgaaagaa 2457
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8235
Number of Sequences: 1807
Number of extensions: 8235
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)