BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZE12RM1.SCF screened BAC_end
(963 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1774 1431 0.0
>3x_Contig1774
Length = 27771
Score = 1431 bits (722), Expect = 0.0
Identities = 798/816 (97%), Gaps = 6/816 (0%)
Strand = Plus / Minus
Query: 37 aaaaccttggatccct-aagggacagtggtccaaagaggtccgagatctcgataacggcc 95
|||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 3745 aaaagcttggatccctcaagggacagtggaccaaagaggtccgagatctcgataacggcc 3686
Query: 96 aacaaatttggaaatgcggaccgttagtggaaaacagtgaaaagaaatacggattcaccg 155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3685 aacaaatttggaaatgcggaccgttagtggaaaacagtgaaaagaaatacggattcaccg 3626
Query: 156 tttttacctccaacttgaacgagatcacagagacagaaaaggatcatttaccaccaactg 215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3625 tttttacctccaacttgaacgagatcacagagacagaaaaggatcatttaccaccaactg 3566
Query: 216 attcttggttgagacccgatattcgcctgtatgaaaacggtatcattacagaggctgaac 275
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3565 attcccggttgagacccgatattcgcctgtatgaaaacggtatcattacagaggctgaac 3506
Query: 276 aaatgaagctgtcactggaacaaaagcaacgtgaaagaagagataagggcgaagacgcac 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3505 aaatgaagctgtcactggaacaaaagcaacgtgaaagaagagataagggcgaagacgcac 3446
Query: 336 aacctcaatacttcaaacagattaaacccatgaaatggctccccgttactggtgaaaata 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3445 aacctcaatacttcaaacagattaaacccatgaaatggctccccgttactggtgaaaata 3386
Query: 396 actactgggaaagaagaaaaaggcacgattggagcaacaccaaatctttatggtgaaaga 455
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3385 actactgggaaagaagaaaaaggcacgattggagcaacaccaaatctttatggtgaaag- 3327
Query: 456 aaaaggtaaaaaagcacgttgccattacattcggccgttactatctcggccactcatcac 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3326 aaaaggtaaaaaagcacgttgccattacattcggccgttactatctcggccactcatcac 3267
Query: 516 tccgcatagtgtcaaaatatgtataataaagtgtcagatttaaataacccatagaaaaga 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3266 tccgcatagtgtcaaaatatgtataataaagtgtcagatttaaataacccatagaaaaga 3207
Query: 576 aactaactcaagagatcaatacacaatccagcctaatgcatgccgaaccagaattttnta 635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 3206 aactaactcaagagatcaatacacaatccagcctaatgcatgccgaaccagaatttttta 3147
Query: 636 ttaattgcataaattcttcgaaagatattcaagcgcgtgctatcagccgattcgaaatcc 695
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 3146 ttaattgcataaattcttcgaaagaaattcaagcgcgtgctatcagccgattcgaaatcc 3087
Query: 696 caagatctcgatctaa-ttccagcccgtgggtcggacgtaacaactnctcttttt-aacc 753
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 3086 caagatctcgatctaatttccagcccgtgggtcggacgtaacaactcctctttttcaacc 3027
Query: 754 ttattcagtggcctagggtagatacaaagacatattcactaatttacttcacatgccaag 813
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 3026 ttattcagtggcctagggtagatacaaagacatattcactaaattacttcacatgccaa- 2968
Query: 814 ggctttttttggacagtttccatgccttttttgcag 849
||||| | | ||||||||||||| |||||||||||
Sbjct: 2967 ggcttctctgtgacagtttccatg-cttttttgcag 2933
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7213
Number of Sequences: 1807
Number of extensions: 7213
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 963
length of database: 10,358,551
effective HSP length: 16
effective length of query: 947
effective length of database: 10,329,639
effective search space: 9782168133
effective search space used: 9782168133
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)