BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZF01FM1.SCF screened BAC_end
(939 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1392 866 0.0
>3x_Contig1392
Length = 9092
Score = 866 bits (437), Expect = 0.0
Identities = 496/509 (97%), Gaps = 5/509 (0%)
Strand = Plus / Plus
Query: 86 atgaacgcgtgccttaaccaataatgatagaaaatgatccgataaaatctacaaacggca 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3360 atgaacgcgtgccttaaccaataatgatagaaaatgatccgataaaatctacaaacggca 3419
Query: 146 gagtataatcgttccaaattcagaattggacaggtatacatattctataaacgcacttca 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3420 gagtataatcgttccaaattcagaattggacaggtatacatattctataaacgcacttca 3479
Query: 206 gtcaatcacatgaggtatttcatacatactcccgtccttgaaatgcagaacgaattttca 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3480 gtcaatcacatgaggtatttcatacatactcccgtccttgaaatgcagaacgaattttca 3539
Query: 266 aactctttcatataacaataaatcgtactattacacaagtatttctataaacttttctag 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3540 aactctttcatataacaataaatcgtactattacacaagtatttctataaacttttctag 3599
Query: 326 agcaagtctgtcaagtatagaggagtgagttttgaagataatgcaacactttgtttgtta 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3600 agcaagtctgtcaagtatagaggagtgagttttgaagataatgcaacactttgtttgtta 3659
Query: 386 tgttttcagaattcttcggcctttacgccaacttctggatcgttgcttgaggcgtccgat 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3660 tgttttcagaattcttcggcctttacgccaacttctggatcgttgcttgaggcgtccgat 3719
Query: 446 actgatgtctgttgtaaccttgacctagattgtctgaat-attctttctgttgccgtag- 503
||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||
Sbjct: 3720 actgatgtctgttgtaaccttgacctagattgtctgaataattcttcctgttgtcgtagt 3779
Query: 504 aattccttctcagacaaaccggatttc-tgaatttagcattccgcct-tctcttaatctc 561
||||||| ||||||||||||||||||| |||||||||||| |||||| |||| ||||||
Sbjct: 3780 aattcctcctcagacaaaccggatttcttgaatttagcatcccgcctctctc-taatctt 3838
Query: 562 cgggttttctttggggtgatgtaaaatct 590
| ||||||||||| | |||||||||||||
Sbjct: 3839 ctggttttctttgtgttgatgtaaaatct 3867
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7683
Number of Sequences: 1807
Number of extensions: 7683
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)