BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZF01RM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1751 1419 0.0
>3x_Contig1751
Length = 24682
Score = 1419 bits (716), Expect = 0.0
Identities = 832/865 (96%), Gaps = 5/865 (0%)
Strand = Plus / Plus
Query: 45 cttttcaccttgagaaaaagacaaggttaaagcaagtactctaagttaatcaaattcgag 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5579 cttttcaccttgagaaaaagacaaggttaaagcaagtactctaagttaatcaaattcgag 5638
Query: 105 tcgactgttcttttgattatttggcttaaaaaagtgatacgaaacatattaatgccttct 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5639 tcgactgttcttttgattatttggcttaaaaaagtgatacgaaacatattaatgccttct 5698
Query: 165 attcactgtgccatctgatacaccgtagatgaacagaggggaaaagaacggctagatgaa 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5699 attcactgtgccatctgatacaccgtagatgaacagaggggaaaagaacggctagatgaa 5758
Query: 225 aattctatccgcgagcgtacctcatactgattaaagtacttaactatttttcatcaattg 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5759 aattctatccgcgagcgtacctcatactgattaaagtacttaactatttttcatcaattg 5818
Query: 285 gctttaattggtagctgcgtgagcgggacattctctatctcttgtcactcctgaatttac 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5819 gctttaattggtagctgcgtgagcgggacattctctatctcttgtcactcctgaatttac 5878
Query: 345 ttatacttgtatataccatatattactcgtgaaaatgtttagtattacacggtcattagt 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5879 ttatacttgtatataccatatattactcgtgaaaatgtttagtattacacggtcattagt 5938
Query: 405 ctgtcacttagctattggtgtactgactaatttccactacccggttccttaaaacatata 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5939 ctgtcacttagctattggtgtactgactaatttccactacccggttccttaaaacatata 5998
Query: 465 cacgtgactggcatttatttctggcggatttctttttcgagcagtggtttgtttcccaaa 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5999 cacgtgactggcatttatttctggcggatttctttttcgagcagtggtttgtttcccaaa 6058
Query: 525 aattttccaagctcatcgcatcttacaacgcttagaaaatgtacaagataggaagaatag 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6059 aattttccaagctcatcgcatcttacaacgcttagaaaatgtacaagataggaagaatag 6118
Query: 585 agttaacgcgctccatcgtacctcagtaacaacgtgcgatncacatctattagacatttc 644
|||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 6119 agttaacgcgctccatcgtacctcagtaacaacgtgcgatcacaatctattagacaattc 6178
Query: 645 anactatgattcactggaagaatatcttagttataaagagaagtaaactgtangggaata 704
| |||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct: 6179 aaactagaattcactggaagaatatcttagttataaggagaagtaaactgtaggggaata 6238
Query: 705 tgtcaacagattagactcaggtgaagctacgcttctttactcgtgaagaagatggagac- 763
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 6239 tgtcaacagataagactcaggtgaagctacgcttctttactcgtgaagaagat-gagact 6297
Query: 764 ttacatgtcaatgatgcttcaatctatgct-cagttagtctaaagagatttgtcctttcg 822
|||||||||||||||||| ||||||||||| |||||||||||||||||| || |||||
Sbjct: 6298 ttacatgtcaatgatgctccaatctatgctccagttagtctaaagagatatggtctttct 6357
Query: 823 aaaatggtaaatcccctactgggattaccctaatct-tgccctttggaattccttatcga 881
|||| || |||| |||||||| |||||| ||||| |||| ||| || |||||||||||
Sbjct: 6358 gaaattgttaatcacctactggaattacctaaatctatgccattt-gatttccttatcga 6416
Query: 882 ggggggacttttgagaacatcgttg 906
|| | |||||||||||||||||||
Sbjct: 6417 tggtgaacttttgagaacatcgttg 6441
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6645
Number of Sequences: 1807
Number of extensions: 6645
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)