BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZF02FM1.SCF screened BAC_end
(963 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig640 1330 0.0
>3x_Contig640
Length = 3164
Score = 1330 bits (671), Expect = 0.0
Identities = 716/729 (98%), Gaps = 3/729 (0%)
Strand = Plus / Minus
Query: 90 acaacaacacctctaccagaagtatccacagagtctaaaagaccagtcaaatcttccatg 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1121 acaacaacacctctaccagaagtatccacagagtctaaaagaccagtcaaatcttccatg 1062
Query: 150 acgtcatccatcatttcttcttcatcatcgtctggacctacaactaataatcgggaacca 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1061 acgtcatccatcatttcttcttcatcatcgtctggacctacaactaataatcgggaacca 1002
Query: 210 gaaacagccttttccaaatcatttgcagcaatttttacacctagagcagccttgacttct 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1001 gaaacagccttttccaaatcatttgcagcaatttttacacctagagcagccttgacttct 942
Query: 270 ttgtgatgttgatattcagacttcaaacgtaactcacgtaagggttgaggtgtcaacaag 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 941 ttgtgatgttgatattcagacttcaaacgtaactcacgtaagggttgaggtgtcaacaag 882
Query: 330 gctctgatattcgtcacaatcggaccgttcataccacataaaacgattctgtcaccctct 389
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 881 gctctgatattcgtcacaatcggaccgttcataccacataaaaagattctgtaaccctct 822
Query: 390 cttaagtaaccattagatagaataacatcgatagtggtaccgaaaccttcaacaaccttc 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 cttaagtaaccattagatagaataacatcgatagtggtaccgaaaccttcaacaaccttc 762
Query: 450 acttcaagaattgtagcttcaacgtgagacaaatatttcaattgcttagacattctcttt 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 acttcaagaattgtagcttcaacgtgagacaaatatttcaattgcttagacattctcttt 702
Query: 510 tgagtcaattctaatagcaaccacaacatatcatgaacaccttcacctgtaacggcagat 569
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 701 tgagtcaattctaatagcaaccacaacaaatcaggaacaccttcacctgtaacggcagat 642
Query: 570 gttggaacaatagagacgtatttggctaggttgttgttttggaaatacaattctgagttc 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 gttggaacaatagagacgtatttggctaggttgttgttttggaaatacaattctgagttc 582
Query: 630 aaaccttgttcagcaagagcgactttgatgttgtcaagtctagtttggaactcttgctta 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 aaaccttgttcagcaagagcgactttgatgttgtcaagtctagtttggaactcttgctta 522
Query: 690 actgctcgntcttgtttgtcaaaggagtctctgaaagagttgtttggggtaaatacccag 749
|||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 521 actgctcgttcttgtttgtcaaaggagtctctgaaagagttgtttggtgtaattacccag 462
Query: 750 tcgtacaattctatcgatctttttcaaggcaacgatgaaaagggggcctttctggctctc 809
|||||||| |||||||||||| |||||||||||||||||| || ||||||||| |||||
Sbjct: 461 tcgtacaa-tctatcgatcttattcaaggcaacgatgaaa--ggagcctttctgtctctc 405
Query: 810 aataatctg 818
|||||||||
Sbjct: 404 aataatctg 396
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7053
Number of Sequences: 1807
Number of extensions: 7053
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 963
length of database: 10,358,551
effective HSP length: 16
effective length of query: 947
effective length of database: 10,329,639
effective search space: 9782168133
effective search space used: 9782168133
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)