BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC42ZF02FM1.SCF screened BAC_end (963 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig640 1330 0.0 >3x_Contig640 Length = 3164 Score = 1330 bits (671), Expect = 0.0 Identities = 716/729 (98%), Gaps = 3/729 (0%) Strand = Plus / Minus Query: 90 acaacaacacctctaccagaagtatccacagagtctaaaagaccagtcaaatcttccatg 149 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1121 acaacaacacctctaccagaagtatccacagagtctaaaagaccagtcaaatcttccatg 1062 Query: 150 acgtcatccatcatttcttcttcatcatcgtctggacctacaactaataatcgggaacca 209 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1061 acgtcatccatcatttcttcttcatcatcgtctggacctacaactaataatcgggaacca 1002 Query: 210 gaaacagccttttccaaatcatttgcagcaatttttacacctagagcagccttgacttct 269 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1001 gaaacagccttttccaaatcatttgcagcaatttttacacctagagcagccttgacttct 942 Query: 270 ttgtgatgttgatattcagacttcaaacgtaactcacgtaagggttgaggtgtcaacaag 329 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 941 ttgtgatgttgatattcagacttcaaacgtaactcacgtaagggttgaggtgtcaacaag 882 Query: 330 gctctgatattcgtcacaatcggaccgttcataccacataaaacgattctgtcaccctct 389 ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct: 881 gctctgatattcgtcacaatcggaccgttcataccacataaaaagattctgtaaccctct 822 Query: 390 cttaagtaaccattagatagaataacatcgatagtggtaccgaaaccttcaacaaccttc 449 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 821 cttaagtaaccattagatagaataacatcgatagtggtaccgaaaccttcaacaaccttc 762 Query: 450 acttcaagaattgtagcttcaacgtgagacaaatatttcaattgcttagacattctcttt 509 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 761 acttcaagaattgtagcttcaacgtgagacaaatatttcaattgcttagacattctcttt 702 Query: 510 tgagtcaattctaatagcaaccacaacatatcatgaacaccttcacctgtaacggcagat 569 |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| Sbjct: 701 tgagtcaattctaatagcaaccacaacaaatcaggaacaccttcacctgtaacggcagat 642 Query: 570 gttggaacaatagagacgtatttggctaggttgttgttttggaaatacaattctgagttc 629 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 641 gttggaacaatagagacgtatttggctaggttgttgttttggaaatacaattctgagttc 582 Query: 630 aaaccttgttcagcaagagcgactttgatgttgtcaagtctagtttggaactcttgctta 689 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 581 aaaccttgttcagcaagagcgactttgatgttgtcaagtctagtttggaactcttgctta 522 Query: 690 actgctcgntcttgtttgtcaaaggagtctctgaaagagttgtttggggtaaatacccag 749 |||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||| Sbjct: 521 actgctcgttcttgtttgtcaaaggagtctctgaaagagttgtttggtgtaattacccag 462 Query: 750 tcgtacaattctatcgatctttttcaaggcaacgatgaaaagggggcctttctggctctc 809 |||||||| |||||||||||| |||||||||||||||||| || ||||||||| ||||| Sbjct: 461 tcgtacaa-tctatcgatcttattcaaggcaacgatgaaa--ggagcctttctgtctctc 405 Query: 810 aataatctg 818 ||||||||| Sbjct: 404 aataatctg 396 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7053 Number of Sequences: 1807 Number of extensions: 7053 Number of successful extensions: 52 Number of sequences better than 1.0e-20: 1 length of query: 963 length of database: 10,358,551 effective HSP length: 16 effective length of query: 947 effective length of database: 10,329,639 effective search space: 9782168133 effective search space used: 9782168133 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)