BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZF02RM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1577 1368 0.0
>3x_Contig1577
Length = 10627
Score = 1368 bits (690), Expect = 0.0
Identities = 846/886 (95%), Gaps = 10/886 (1%)
Strand = Plus / Minus
Query: 49 gcttatatgatatttttattcaacattttatatatgaacagtatatgcgatattttgagt 108
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 6013 gcttatatgatatttttattcaacaatttatatatgaacagtatatgcgatattttgagt 5954
Query: 109 agtttatgttttattttttctttcgaagtatgtatggaagggacactagcaaatggttgt 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5953 agtttatgttttattttttctttcgaagtatgtatggaagggacactagcaaatggttgt 5894
Query: 169 tgacttctttcttttgttcgaaattatggtacgagagcgagtcagccagagattccatgg 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5893 tgacttctttcttttgttcgaaattatggtacgagagcgagtcagccagagattccatgg 5834
Query: 229 agtcttctgggactgagtcctccaaaacttttgtcaataataccaactcttttctttcaa 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5833 agtcttctgggactgagtcctccaaaacttttgtcaataataccaactcttttctttcaa 5774
Query: 289 tttgcatttcagtattgaaacgttccttgctgctctttatcttgtcgtacaacaactgct 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5773 tttgcatttcagtattgaaacgttccttgctgctctttatcttgtcgtacaacaactgct 5714
Query: 349 tttgctcgtcagtgactttttctttccaaacctttttacatgatttacacatctcttggt 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5713 tttgctcgtcagtgactttttctttccaaacctttttacatgatttacacatctcttggt 5654
Query: 409 acctgaggtgtgcgttaagcatagaatccatttttgtctgtgaatgagatattattttca 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5653 acctgaggtgtgcgttaagcatagaatccatttttgtctgtgaatgagatattattttca 5594
Query: 469 taagtggagtatgtctttccaagtacgtgggacggtgcattggagcttcttcttgttnta 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 5593 taagtggagtatgtctttccaagtacgtgggacggtgcattggagcttcttcttgtttta 5534
Query: 529 tgtacctctgttcccaaattagattaaactgtagtttatattttgagcgaaac-aaagat 587
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 5533 tgtacctctgttcccaaattagattaaactgtagtttatattttgagcgaaacaaaagat 5474
Query: 588 atgcacttgaaataggacacgatatttgcaggtaccttgccagttcttcgtttcctaatt 647
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 5473 atgcacttgaaataggacacgatattgcaaggtaccttgccagttcttcgtttcctaatt 5414
Query: 648 ttctgaaatcgatcttattgaattgggag-acaacgcatgataaaccc-tcttttcgtga 705
|||||||||||||||||||||||| | || |||||||||||||||||| |||||||||||
Sbjct: 5413 ttctgaaatcgatcttattgaatttgaagaacaacgcatgataaacccttcttttcgtga 5354
Query: 706 ttgataatgatttccattctgccctaatttgnctcaccaaaggaatatgactcctatgat 765
|||||||||||| |||||||||||| ||| | ||||||||||||||||||||||||||||
Sbjct: 5353 ttgataatgattcccattctgcccttattcgcctcaccaaaggaatatgactcctatgat 5294
Query: 766 ctttattatcaccattaatataaagcctggtcatttgcagctgtaaatattattgggata 825
|||||| |||| || |||||| ||||||| ||||||||||||||||| |||||| |||
Sbjct: 5293 ctttataatcagcaataatattaagcctgtcgatttgcagctgtaaataatattggaata 5234
Query: 826 catcttagtggtctttggattcagtctctttgaaggatttcttggttgttcacctgtagg 885
|||| ||||||||| | ||| |||||| |||||||||||||| |||| ||||||| | |
Sbjct: 5233 catc-tagtggtctct-gatcaagtctc-ttgaaggatttctt-gttggtcacctgga-g 5179
Query: 886 gaangaaaat-ttgcaggaagtattcnaattcggtaacatttttaa 930
|| |||||| |||||||||| | || || ||||||||||||||||
Sbjct: 5178 gacagaaaatcttgcaggaag-agtcgaagtcggtaacatttttaa 5134
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8613
Number of Sequences: 1807
Number of extensions: 8613
Number of successful extensions: 69
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)