BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC42ZF03FM1.SCF screened BAC_end
         (979 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1706                                                        1285   0.0  

>3x_Contig1706 
          Length = 16303

 Score = 1285 bits (648), Expect = 0.0
 Identities = 741/767 (96%), Gaps = 4/767 (0%)
 Strand = Plus / Minus

                                                                        
Query: 84   gcttctcacaatcagtagaggcatagtaacatacctcgggaagcgtataatgtctcaatc 143
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1590 gcttctcacaatcagtagaggcatagtaacatacctcgggaagcgtataatgtctcaatc 1531

                                                                        
Query: 144  gctcatactactattcatgttgtttgtcgtaaaatattccgacaaatctattgatctagc 203
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1530 gctcatactactattcatgttgtttgtcgtaaaatattccgacaaatctattgatctagc 1471

                                                                        
Query: 204  tctagataaagtagactcccgtcattcttcatggatatctaaactaattcagttattaag 263
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1470 tctagataaagtagactcccgtcattcttcatggatatctaaactaattcagttattaag 1411

                                                                        
Query: 264  ccaattcacagggataagtaaggtcagtctacaagttcaataattaagtaaataagtcat 323
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1410 ccaattcacagggataagtaaggtcagtctacaagttcaataattaagtaaataagtcat 1351

                                                                        
Query: 324  cgcgtcctactagccatacacctagagtggtgaggaactgaattatatgcatttaagtaa 383
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1350 cgcgtcctactagccatacacctagagtggtgaggaactgaattatatgcatttaagtaa 1291

                                                                        
Query: 384  tgactctttatcggcgttcctattcctatttacttttttctttttgaacaagtcatctca 443
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1290 tgactctttatcggcgttcctattcctatttacttttttctttttgaacaagtcatctca 1231

                                                                        
Query: 444  tctcatctcttgttctgttgaattgtacggagttcattaaaacaagtgccttagtacaac 503
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1230 tctcatctcttgttctgttgaattgtacggggttcattaaaacaagtgccttagtacaac 1171

                                                                        
Query: 504  gtagatattcgaagtgaaatggaaactaaagtaagcagctgggtgctaaagatcgcattt 563
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1170 gtagatattcgaagtgaaatggaaactaaagtaagcagctgggtgctaaagatcgcattt 1111

                                                                        
Query: 564  caagaaattgatggtatagcataatgtcgaaatacagatggcgaganttgattgatttga 623
            || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1110 caggaaattgatggtatagcataatgtcgaaatacagatggcgagatttgattgatttga 1051

                                                                        
Query: 624  atgaccaagagaagagctttctttctccattagcatgcattgcacacattgatgttcatg 683
            ||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||
Sbjct: 1050 atgacaaagagaagagctttctttctccattagcatgcattgcacacattgatgtcaatg 991

                                                                        
Query: 684  ccctttttgcacaggtagaacaagtacgatgcggtttttcaagggatgatcccgtagttg 743
            || ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 990  ccttttttgcacaggtagaacaggtacgatgcggtttttcaagggatgatccggtagttg 931

                                                                        
Query: 744  cagtacaattggactagtatttttatccgtttcttatgccagttcgaaagttatattgtg 803
            |||||||| |||||||||| ||||| |||||||||||| ||| ||||||| |||| ||||
Sbjct: 930  cagtacaa-tggactagta-ttttagccgtttcttatg-cagctcgaaag-tataatgtg 875

                                                           
Query: 804  tcccgctttgaaagcttacctgatggcaataaaaagggtgataaaat 850
            |||||| | || ||| ||| |||||  |  |||||| ||||||||||
Sbjct: 874  tcccgcatggagagcatacttgatgcgataaaaaagtgtgataaaat 828


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7641
Number of Sequences: 1807
Number of extensions: 7641
Number of successful extensions: 317
Number of sequences better than 1.0e-20: 1
length of query: 979
length of database: 10,358,551
effective HSP length: 16
effective length of query: 963
effective length of database: 10,329,639
effective search space: 9947442357
effective search space used: 9947442357
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)