BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZF03RM1.SCF screened BAC_end
(954 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1515 1314 0.0
>3x_Contig1515
Length = 8855
Score = 1314 bits (663), Expect = 0.0
Identities = 828/867 (95%), Gaps = 13/867 (1%)
Strand = Plus / Plus
Query: 43 aagcttcccaaactaaagcaatctacttctgctgagataaccaaaaatttcaaaaaacta 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6889 aagcttcccaaactaaagcaatctacttctgctgagataaccaaaaatttcaaaaaacta 6948
Query: 103 gcgaagaaataccatcctgataagaatccaaagtacaggaagttgtatgaacgaattaac 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6949 gcgaagaaataccatcctgataagaatccaaagtacaggaagttgtatgaacgaattaac 7008
Query: 163 ttgatcaccaagctattatctgatgaaggtcatcgtaagacttacgactactatttgaaa 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7009 ttgatcaccaagctattatctgatgaaggtcatcgtaagacttacgactactatttgaaa 7068
Query: 223 aatggatttcctaaatatgactacaaaaaaggtgggtttttcttcaatagggttacaccc 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7069 aatggatttcctaaatatgactacaaaaaaggtgggtttttcttcaatagggttacaccc 7128
Query: 283 tctgtatggttcaccttcttctttctgtatgttcttgctggtgtaattcatcttgtgcta 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7129 tctgtatggttcaccttcttctttctgtatgttcttgctggtgtaattcatcttgtgcta 7188
Query: 343 ttgaaactccataacaacgcaaataagaaaagaattgagaacttcgtggctaaggtcaga 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7189 ttgaaactccataacaacgcaaataagaaaagaattgagaacttcgtggctaaggtcaga 7248
Query: 403 gaacaggacacaaccaattcattgggtgaatctaaattggtcttcaaagagtctgaggac 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7249 gaacaggacacaaccaattcattgggtgaatctaaattggtcttcaaagagtctgaggac 7308
Query: 463 tcggaagataaacaattacttgtgagattcggtgaagtgttcgtcattcagcctgacgaa 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7309 tcggaagataaacaattacttgtgagattcggtgaagtgttcgtcattcagcctgacgaa 7368
Query: 523 tcattggcgaaaatatccacggacgacatcattgatcctggtatcaacgacactctattg 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7369 tcattggcgaaaatatccacggacgacatcattgatcctggtatcaacgacactctattg 7428
Query: 583 gttaaattacctaaatggatctggaat-aaaccttangtaagttcatcaatattggcact 641
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 7429 gttaaattacctaaatggatctggaataaaaccttaggtaagttcatcaatattggcact 7488
Query: 642 tcgaaaagtcaacaacccaatataggctctncatac-ataataatagg-acagc-atata 698
|||||||||||||||||||||| ||||||| || || | ||||| ||| ||||| | |||
Sbjct: 7489 tcgaaaagtcaacaacccaataaaggctctccaaacaaaaataaaaggaacagcaaaata 7548
Query: 699 tactcgaaagccc-atgaaatgtgaatagcctatg-acctataaaggggctt-ataattt 755
|||||||||||| ||||||||||||||||||| | |||||||||||| || ||||||
Sbjct: 7549 aactcgaaagcccaatgaaatgtgaatagcctaggaacctataaagggctttaataattc 7608
Query: 756 ctggtaatctatacgncattatatttcgcaacat-aataggaaactaatttaatatatta 814
|| ||||||||||| ||||||| |||| |||| ||||| |||||||||||||||||||
Sbjct: 7609 ttgttaatctatacgtcattata-ttcggcacataaatagaaaactaatttaatatatta 7667
Query: 815 tctttatt-agggccagctgtgcattat-attatcccatctttttcatcctt-tcatcca 871
|||||||| ||||||||||| ||| ||| |||| ||||| ||||||| ||| |||||||
Sbjct: 7668 tctttattaagggccagctg-gcaatataattaccccattcttttcattcttctcatcca 7726
Query: 872 ccttttgacggcttntctctataaatt 898
||| |||||||||| ||||||| ||||
Sbjct: 7727 cctcttgacggcttttctctatcaatt 7753
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7323
Number of Sequences: 1807
Number of extensions: 7323
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 954
length of database: 10,358,551
effective HSP length: 16
effective length of query: 938
effective length of database: 10,329,639
effective search space: 9689201382
effective search space used: 9689201382
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)