BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZF04FM1.SCF screened BAC_end
(963 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1766 1193 0.0
>3x_Contig1766
Length = 23951
Score = 1193 bits (602), Expect = 0.0
Identities = 665/681 (97%), Gaps = 4/681 (0%)
Strand = Plus / Minus
Query: 87 cgaaatgtctttgtctaaagatgcgaaaaaaaaaggaaaggtccacaggtttctaactaa 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11672 cgaaatgtctttgtctaaagatgcgaaaaaaaaaggaaaggtccacaggtttctaactaa 11613
Query: 147 aaagaaaaatgattcatgatgaagcgacaatacaagaagtaatggacggtaggtaaaaac 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11612 aaagaaaaatgattcatgatgaagcgacaatacaagaagtaatggacggtaggtaaaaac 11553
Query: 207 taacacgtacggaagagcaaataagttgtatatttcagcaccagtagttccgattggtgt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11552 taacacgtacggaagagcaaataagttgtatatttcagcaccagtagttccgattggtgt 11493
Query: 267 catctatacaccaagtcatttggggtggcaaacgtctggacgaatcgggcatttagtggc 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11492 catctatacaccaagtcatttggggtggcaaacgtctggacgaatcgggcatttagtggc 11433
Query: 327 ttagtgctcatcaattgctgttccgtaagacggtattaattttttctttttctctattat 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11432 ttagtgctcatcaattgctgttccgtaagacggtattaattttttctttttctctattat 11373
Query: 387 ttgctatttcgcgtcttgagttaacgtgtcagaatgttatctccacttattgaacaaaga 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11372 ttgctatttcgcgtcttgagttaacgtgtcagaatgttatctccacttattgaacaaaga 11313
Query: 447 aacatcccgaagtgagatcataaggaaccttgacggtaacaagggtggctttccgaatgg 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11312 aacatcccgaagtgagatcataaggaaccttgacggtaacaagggtggctttccgaatgg 11253
Query: 507 ctcctttcacgtggacactatttttctctgaaaagtaatttgatcacgtggacggccttt 566
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 11252 ctcctttcacgtggacactatttttctctgaaaggtaatttgatcacgtggacggccttc 11193
Query: 567 catcacgtgtaaatgacgttttctcatcgacgctttgtttttcgccattccagancacaa 626
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct: 11192 catcacgtgtaaatgacgtttcttcatcgacgctttgtttttcgccattccagacaacaa 11133
Query: 627 aaaagttcagtttccataagaaacgtaatgatcttgaaaaacagtcacttttggaatgac 686
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 11132 aaaagttcagtttccataagaaacgtaatgatcttgaaaaacagtcac-tttggaatgac 11074
Query: 687 tgactggtcaaattacattatatagcatagggcatactggcataactgtttaacgctt-a 745
|||||| |||||||||| ||||||||||||| ||||||||||| |||||| |||||| |
Sbjct: 11073 tgactgttcaaattaca-tatatagcataggcaatactggcatacctgttt-acgcttaa 11016
Query: 746 tagggtgtttttccttcacat 766
|||| |||||||| |||||||
Sbjct: 11015 taggttgtttttcgttcacat 10995
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8690
Number of Sequences: 1807
Number of extensions: 8690
Number of successful extensions: 78
Number of sequences better than 1.0e-20: 1
length of query: 963
length of database: 10,358,551
effective HSP length: 16
effective length of query: 947
effective length of database: 10,329,639
effective search space: 9782168133
effective search space used: 9782168133
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)